PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00242.1.g00460.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 431aa    MW: 46484 Da    PI: 6.6507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00242.1.g00460.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS269.88.8e-83274191374
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 
                                   l++ Ll+ + a ++gd+++a a+L+++  +as +g  p qR+aayf+ ALa+rl+r      + +++s+    + +e++ a
  Zpz_sc00242.1.g00460.1.sm.mk  27 LIHRLLSSVAAGEAGDAQAAAAALQEVYRRASFRGgYPAQRVAAYFADALASRLLR------SPVAASPR--ATRTEQFLA 99 
                                   57899999999*********************99978*******************......33333333..35789999* PP

                          GRAS  81 lklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.....eg........ppslRiTg 146
                                   +++f+++sP+++++h+taNqaI+ea+e    +r+H+iDfd+ +G+QWp+L+q+L++ +     ++        + slRiTg
  Zpz_sc00242.1.g00460.1.sm.mk 100 YTMFYQTSPLYQLAHFTANQAIVEAFEAGgrRRLHVIDFDVLYGFQWPSLIQSLSDAAatstsSSsdgdgdepAVSLRITG 180
                                   **************************9766699*********************987755555005556665355****** PP

                          GRAS 147 vgspesgskeeleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleser 224
                                   +g     s++el++t+ rL++fA+ + +++fef+ +v   ++  + ++  vk+  + +++Vnlv+  +r       ++s+ 
  Zpz_sc00242.1.g00460.1.sm.mk 181 FGT----SADELRQTEARLTRFASGCaNLRFEFEGIVDGLTSRGRRHDAVVKTedDATVVVNLVFPDERDT----GTSSRE 253
                                   ***....9***************97549*******644444455555555555548899999999554443....344446 PP

                          GRAS 225 devLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                                    ++L   +sl+P  v +ve+   ++s+         +l rf+ +l+y++a+fdsl++ lp++s er  +E+  lg ei+n+
  Zpz_sc00242.1.g00460.1.sm.mk 254 CSTLARARSLNPSFVFLVEKHDGTGSSatsrgptsLLLPRFTACLRYFAAVFDSLHECLPADSAERLAIEKNHLGSEISNA 334
                                   79*****************997776555777888789******************************************** PP

                          GRAS 298 vacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.....yrve.eesgslv.lgWkdrpLvsv 370
                                   +a   ++ +  +h+  + W+ ++e+aGF+ v+ls++a++qaklll++ ++ g     +rv   +sg ++ lgW+d +L+++
  Zpz_sc00242.1.g00460.1.sm.mk 335 IASLDDHhHGDDHTAGAIWKVMMEDAGFEGVKLSSRAVSQAKLLLKMKSGCGagsggFRVVdGDSGKAMsLGWRDSALITA 415
                                   **988874667899999****************************9976332234459988545666666*********** PP

                          GRAS 371 SaWr 374
                                   +aWr
  Zpz_sc00242.1.g00460.1.sm.mk 416 TAWR 419
                                   ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.1161392IPR005202Transcription factor GRAS
PfamPF035143.1E-8027419IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MARLEQDDET WMMVSDDGAG GGGGIRLIHR LLSSVAAGEA GDAQAAAAAL QEVYRRASFR  60
GGYPAQRVAA YFADALASRL LRSPVAASPR ATRTEQFLAY TMFYQTSPLY QLAHFTANQA  120
IVEAFEAGGR RRLHVIDFDV LYGFQWPSLI QSLSDAAATS TSSSSDGDGD EPAVSLRITG  180
FGTSADELRQ TEARLTRFAS GCANLRFEFE GIVDGLTSRG RRHDAVVKTE DDATVVVNLV  240
FPDERDTGTS SRECSTLARA RSLNPSFVFL VEKHDGTGSS ATSRGPTSLL LPRFTACLRY  300
FAAVFDSLHE CLPADSAERL AIEKNHLGSE ISNAIASLDD HHHGDDHTAG AIWKVMMEDA  360
GFEGVKLSSR AVSQAKLLLK MKSGCGAGSG GFRVVDGDSG KAMSLGWRDS ALITATAWRR  420
RRSSVIHRLN Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-446242153381Protein SCARECROW
5b3h_A6e-446242152380Protein SCARECROW
5b3h_D6e-446242152380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00242.1.g00460.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.10.0DELLA protein DWARF8
TrEMBLK3Y6Y10.0K3Y6Y1_SETIT; Uncharacterized protein
STRINGSi009972m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.15e-45GRAS family protein