PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00242.1.g00050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 460aa    MW: 48458.3 Da    PI: 10.5291
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00242.1.g00050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-24241330190
                            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                                     +fY+ Y+ +vGF+vrk++ ++sk++geit+r+f Cs+eg+r+  k + +++r + + +rtgC+a+l ++++k d+k ev
  Zpz_sc00242.1.g00050.1.sm.mkhc 241 EFYRYYGWMVGFHVRKEYGNRSKKTGEITSRRFSCSREGHRAGAKAA-SNKRLRMPDSRTGCHAHLIIRRRKqDSKLEV 318
                                     6******************************************9998.99999*****************999****** PP

                            FAR1  79 tkleleHnHela 90 
                                     + +e  HnH+l+
  Zpz_sc00242.1.g00050.1.sm.mkhc 319 YVFEPRHNHPLF 330
                                     **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-21241330IPR004330FAR1 DNA binding domain
PROSITE profilePS508119.328256330IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDTTARVSDQ VRPSSPSPAM NSSEADPHPA PPAAAAQSAE PGSQGSIPSP QKPNPTIPTP  60
PPRNASAANA TAESSRNAPE PTTATAAPSL KAPGVTTAAP CRKSSRAAST TAAATAKPSR  120
NTPGPTTATT APSLKALGVT TAAPSLKASG ATSTAAAACL RNPSGVTTSA AAVSRIPSAP  180
ATTTTNAISG YPSVATAAVA VQNPLGTAAV GSVPRGTAPT RPEDYTPRMG MEFESEQEAY  240
EFYRYYGWMV GFHVRKEYGN RSKKTGEITS RRFSCSREGH RAGAKAASNK RLRMPDSRTG  300
CHAHLIIRRR KQDSKLEVYV FEPRHNHPLF APSSMPCPFR GTAMPNGVPT PDYLANVGQE  360
NLREKSSKAR TKESKKGQKN KIQPRNCIEK GLRKKQKIHT EQSSMPYPLS NASAQPGNAL  420
FQGIDLSNPT GPINYEGMHS GLHLSFTPEL GFDLSHLSDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00242.1.g00050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880889.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880890.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880891.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880892.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880893.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880894.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880895.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880896.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880897.11e-59protein FAR1-RELATED SEQUENCE 12
RefseqXP_025880898.11e-59protein FAR1-RELATED SEQUENCE 12
TrEMBLA0A0D9ZKQ75e-93A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
TrEMBLA0A1E5VTY11e-95A0A1E5VTY1_9POAL; Uncharacterized protein (Fragment)
STRINGOGLUM04G12170.18e-94(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15895914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.12e-15FAR1 family protein