PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00238.1.g00230.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 619aa    MW: 67147.8 Da    PI: 9.44
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00238.1.g00230.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-16202249148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l
  Zpz_sc00238.1.g00230.1.am.mk 202 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 249
                                   79******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.869197253IPR017930Myb domain
SuperFamilySSF466894.58E-24200317IPR009057Homeodomain-like
SMARTSM007173.6E-13201251IPR001005SANT/Myb domain
PfamPF002491.1E-14202249IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-21203256IPR009057Homeodomain-like
CDDcd001671.81E-11204249No hitNo description
PROSITE profilePS5129410.408254325IPR017930Myb domain
SMARTSM007173.3E-6254323IPR001005SANT/Myb domain
PfamPF002493.2E-7255319IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-20257324IPR009057Homeodomain-like
CDDcd001671.13E-4257319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MMSDRAGYIA GDAMSLANAL QGRNRLNLEK RLRLSARKCH ANRPRLKSGC SACTATSVWR  60
ARSGSCTAHL ITPTPGWGLR FPCPAAITTP PPPPCLSPSS SSSTLGEGRR RPPPAPRRSS  120
NPRRLHGCCC RFAAFLPAVG TITRSSEIKE FGEVLGRGGE KRDRRHTASK QQGTTTGAEG  180
TMARLGSSGD GGEGGGGGAL RKGPWTQAED KLLVDHVRRH GEGNWNAVRR ETGLQRCGKS  240
CRLRWANHLR PNLRKGPFSP EEERHILRLH GLIGNKWARI SSTLSFGVFF KLVIFFFRTL  300
CSPQLPGRTD NEIKNYWNTR FKRRQRAGLP LYPPDIEREV AMLRAQNVNP FADNDGNACA  360
NANASFPAPL LFDAANPFSL PPTDPSPSGS ATASHSPLIN QNYPLLNQMQ GMQQLHFANP  420
QQGNCGSAPQ LVFHQDVHTG LGHSGFGAGL PPLPNRVHEL PSIQFDTASS GNALLNSLLL  480
GDVHMPRATP TMFRVGSMPE LMNHDPSSGM MVHHGGASDS DVTSQCPPGE DHLQQGGKWD  540
FILEDVKPAK RKAASEVELN VSDMYGANPA EWIGNNGGST VPSPGSASAV TDEEFNLEMQ  600
QFMSLLPQSL DEPNWNAQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-242003245107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00238.1.g00230.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3738042e-95AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813892.11e-171transcription factor MYB97-like
TrEMBLK3XX970.0K3XX97_SETIT; Uncharacterized protein
STRINGSi006555m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123972632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.19e-55myb domain protein 101