PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00235.1.g00380.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 356aa MW: 37630.2 Da PI: 9.8535

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00235.1.g00380.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.8e-39	127	186	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a+kcprC+stntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+ss Zpz_sc00235.1.g00380.1.am.mk 127 PEAVKCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKAKRSS 186 5789****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	118	179	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-33	129	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.329	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MNHAALPSFT SGDLDASSRA VHTYAYMKAT EGGIRDKPTE IFTGWLVCDP EATPSGWSSR 60 LAVLPPTKRY LARRRRLRLL PRAMQEFQSI PGLARRLFGG AGASDLRRAH QAQQGPGARC 120 GGVSPAPEAV KCPRCESTNT KFCYYNNYNL SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR 180 KAKRSSASAA SSTPSTPTST ESKNPRRAPA PSPRRTSSGR SSPTGLAAAA APVTPSSSNN 240 IAVTGHSSAN PFSTVDVAPP APIFADQAAA LASLFTPPPP PQLPVFSFTA QSNKDEAALV 300 AGQAARPDDE AASDMAPFTS LDAGIFEQLG DASAAAAYWN AGSCWTDVQD PSMYLP

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MNHAALPSFT SGDLDASSRA VHTYAYMKAT EGGIRDKPTE IFTGWLVCDP EATPSGWSSR  60
LAVLPPTKRY LARRRRLRLL PRAMQEFQSI PGLARRLFGG AGASDLRRAH QAQQGPGARC  120
GGVSPAPEAV KCPRCESTNT KFCYYNNYNL SQPRHFCKSC RRYWTKGGVL RNVPVGGGCR  180
KAKRSSASAA SSTPSTPTST ESKNPRRAPA PSPRRTSSGR SSPTGLAAAA APVTPSSSNN  240
IAVTGHSSAN PFSTVDVAPP APIFADQAAA LASLFTPPPP PQLPVFSFTA QSNKDEAALV  300
AGQAARPDDE AASDMAPFTS LDAGIFEQLG DASAAAAYWN AGSCWTDVQD PSMYLP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00235.1.g00380.1.am.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:11470159}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028132	1e-92	AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBank	AK061000	1e-92	AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBank	AK100892	1e-92	AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.
GenBank	AK101321	1e-92	AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBank	AP005284	1e-92	AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBank	AP014958	1e-92	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-92	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822624.1	1e-111	dof zinc finger protein 4-like
Swissprot	Q6Z345	2e-97	DOF4_ORYSJ; Dof zinc finger protein 4
TrEMBL	A0A2S3GST5	1e-110	A0A2S3GST5_9POAL; Uncharacterized protein
STRING	Sb04g029300.1	1e-96	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6496	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-30	DOF zinc finger protein 1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]