PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00227.1.g00180.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 267aa MW: 28365.9 Da PI: 9.6917

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00227.1.g00180.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.1e-33	71	129	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe Zpz_sc00227.1.g00180.1.am.mkhc 71 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 129 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-38	56	131	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-29	63	131	IPR003657	WRKY domain
PROSITE profile	PS50811	37.539	66	131	IPR003657	WRKY domain
SMART	SM00774	4.0E-38	71	130	IPR003657	WRKY domain
Pfam	PF03106	7.0E-26	72	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MSSFLNEEFS PGTAFSDYWQ IAIFSGKVDS LGVATVTTAA TNSAMDMGAA ASRSVREPRV 60 VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTHP GCSVRKHVER ASHDLKSVIT 120 TYEGKHNHEV PAARNSGQAG SGSGSAPSAA QASYRRQEPA SGNFAHFGGT APFGSLVLPP 180 RGHLGPAAGN FHFGMVPPGM AIPMPSLGSL APTTMVQISP SMQGYQGSMM PGELKVEPVS 240 QSSFPRGNAA PSVYQQIMSR PPFGPQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-40	62	132	8	78	Probable WRKY transcription factor 4
2lex_A	9e-40	62	132	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00227.1.g00180.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU957197	1e-108	EU957197.1 Zea mays clone 1585477 hypothetical protein mRNA, complete cds.
GenBank	KJ728370	1e-108	KJ728370.1 Zea mays clone pUT6652 WRKY transcription factor (WRKY52) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802032.1	1e-121	LOW QUALITY PROTEIN: probable WRKY transcription factor 2
Swissprot	Q9FG77	9e-54	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A1E5WJ69	1e-131	A0A1E5WJ69_9POAL; Putative WRKY transcription factor 2
STRING	Pavir.J40119.1.p	1e-123	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12338	22	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	5e-52	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]