PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00223.1.g00430.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 889aa MW: 94521.5 Da PI: 9.9275

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00223.1.g00430.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.7	7.4e-17	718	772	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ LAk+l+L rqV vWFqNrRa+ k Zpz_sc00223.1.g00430.1.am.mk 718 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 772 788899***********************************************98 PP
2	HD-ZIP_I/II	123.3	1.2e-39	718	808	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+++LEe+F+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ Zpz_sc00223.1.g00430.1.am.mk 718 RKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 798 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelk 92 ke +eLr +lk Zpz_sc00223.1.g00430.1.am.mk 799 KELAELR-ALK 808 ****9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-16	708	773	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-17	709	775	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	714	774	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	716	778	IPR001356	Homeobox domain
CDD	cd00086	2.76E-16	718	775	No hit	No description
Pfam	PF00046	2.4E-14	718	772	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	749	772	IPR017970	Homeobox, conserved site
CDD	cd14686	9.06E-4	765	806	No hit	No description
Pfam	PF02183	4.2E-10	774	808	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.5E-24	774	817	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 889 aa Download sequence Send to blast
MAISVATEAE RFFHGEKKKA GTYYSGSSDG DDERGPRFRF RSSGSGMLGP GMNDARGSPD 60 PLPFMGQGHE AEACGGQSRR NDCAWRTVGP TSSRHAGWAH ASSTPRAAHT EAGFPLVSSA 120 WVPIPLSCPG GPPSVLVSSA KPPLVCAVGA LGHGEIMGAC MQSYPDIVSR RPSPRHQIST 180 SRLSSGICSG LYRVLRPNGF IPLGFYSSYQ ASGTEEMDRG GWPTTGRDRP RSIRTHAARL 240 LAPVHHATSH TTATVSGFGG LLRGGIAIAS SSSSILGMGP PRALTPSTVT SPRRAAPRYT 300 VAADWRAGGG ARARTALAAC SRSICRCPCP LPPHASPVLP YGVDTRGALG PPCYCCILSR 360 SQRSYSNLRN LTTDGHAAVH VTPRRFKDTD WGGPMNLGAV AFTALRRPLH VMTSGSAAAR 420 ADLLGRKLGR ASCPAVCHHE ALLRRELEMQ GEEGHFPRRA SSPVLTHDIP LRFKLSDPAL 480 PFLPGHVRRV NRSNPPLSQA HTNTGREERV PGRLAPSCHA AAIKSRRPCE FRRFQYSTGR 540 MELGLSLGAT MADAGRDLVL GLGMGMGVSR REDEGAERRG KSDREEAAAA PARRELEFGA 600 GRCGRSSPEP PARLTFLSME PTLGLPWPSP DTGHLLASTR GFDVNRAPSC ATGAAGEEDD 660 ERDDAGAGGA AVSSSSPNNS AGSFPTDFSA RGQAGTGGRG GDRACSRASD EDDGGSSRKK 720 LRLSKEQSAF LEENFKEHAT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC 780 EYLKRCCETL TEENRRLQKE LAELRALKTV NPFYMHLPAT TLSMCPSCER VSSNSATAPG 840 ASAPAAAPAL SSGGIGDAAP EQRPSSFAAL FSAPLHRPLA AQPQAPASS

Sequence ? help Back to Top

Protein Sequence Length: 889 aa Download sequence Send to blast

MAISVATEAE RFFHGEKKKA GTYYSGSSDG DDERGPRFRF RSSGSGMLGP GMNDARGSPD  60
PLPFMGQGHE AEACGGQSRR NDCAWRTVGP TSSRHAGWAH ASSTPRAAHT EAGFPLVSSA  120
WVPIPLSCPG GPPSVLVSSA KPPLVCAVGA LGHGEIMGAC MQSYPDIVSR RPSPRHQIST  180
SRLSSGICSG LYRVLRPNGF IPLGFYSSYQ ASGTEEMDRG GWPTTGRDRP RSIRTHAARL  240
LAPVHHATSH TTATVSGFGG LLRGGIAIAS SSSSILGMGP PRALTPSTVT SPRRAAPRYT  300
VAADWRAGGG ARARTALAAC SRSICRCPCP LPPHASPVLP YGVDTRGALG PPCYCCILSR  360
SQRSYSNLRN LTTDGHAAVH VTPRRFKDTD WGGPMNLGAV AFTALRRPLH VMTSGSAAAR  420
ADLLGRKLGR ASCPAVCHHE ALLRRELEMQ GEEGHFPRRA SSPVLTHDIP LRFKLSDPAL  480
PFLPGHVRRV NRSNPPLSQA HTNTGREERV PGRLAPSCHA AAIKSRRPCE FRRFQYSTGR  540
MELGLSLGAT MADAGRDLVL GLGMGMGVSR REDEGAERRG KSDREEAAAA PARRELEFGA  600
GRCGRSSPEP PARLTFLSME PTLGLPWPSP DTGHLLASTR GFDVNRAPSC ATGAAGEEDD  660
ERDDAGAGGA AVSSSSPNNS AGSFPTDFSA RGQAGTGGRG GDRACSRASD EDDGGSSRKK  720
LRLSKEQSAF LEENFKEHAT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR TKLKQTEVDC  780
EYLKRCCETL TEENRRLQKE LAELRALKTV NPFYMHLPAT TLSMCPSCER VSSNSATAPG  840
ASAPAAAPAL SSGGIGDAAP EQRPSSFAAL FSAPLHRPLA AQPQAPASS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	716	722	SRKKLRL
2	766	774	RRARTKLKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00223.1.g00430.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036447	0.0	BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBank	KJ726911	0.0	KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5209	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	4e-57	homeobox from Arabidopsis thaliana