PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00220.1.g00030.1.sm.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 300aa MW: 33210.8 Da PI: 9.2001

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00220.1.g00030.1.sm.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.8	2e-34	57	148	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+y++++d++++++isws g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++ we Zpz_sc00220.1.g00030.1.sm.mkhc 57 FLTKVYDMVSDPATDSIISWSPGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 126 9**************************************************************999......... PP EEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkks 102 ++++ F k++k+ll++ikrkk+ Zpz_sc00220.1.g00030.1.sm.mkhc 127 WANEGFVKDQKHLLKTIKRKKK 148 ********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.6E-56	53	146	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.92E-35	53	146	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.9E-37	54	146	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.4E-31	57	146	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-19	57	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-19	95	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.0E-19	108	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGSKKKSPQP AAAAAEGTPT AAGEAPGDVG ALPAGKGPAP APAPAVVVPK PPDVAPFLTK 60 VYDMVSDPAT DSIISWSPGG GSFVIWDSHA FERDLLPRHF KHNHFTSFIR QLNTYGFHKV 120 DPDRWEWANE GFVKDQKHLL KTIKRKKKIS QETPDPPQAP VKPAPGTETI EIGNYGGLEK 180 EVEKLKRDKT LLMQQLVDLR HYQQSSNLEL QNLIQRLHVM EQNQQQMMAL LAIAVQNPDF 240 LNQLVQQQRR SNLWNDDGSK KRRFIALEQG PAAEQETSGA SAPIIQYRPP VPAIANEYLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-25	32	146	14	129	Heat shock factor protein 1
5d5v_B	2e-25	32	146	14	129	Heat shock factor protein 1
5d5v_D	2e-25	32	146	14	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00220.1.g00030.1.sm.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004985150.1	1e-164	heat stress transcription factor A-9
Swissprot	Q10PR4	1e-140	HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBL	A0A1E5WFT3	1e-169	A0A1E5WFT3_9POAL; Heat stress transcription factor A-9
STRING	Si035840m	1e-164	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11494	30	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	3e-70	heat shock factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]