PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00219.1.g00100.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 527aa    MW: 55681.7 Da    PI: 9.9861
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00219.1.g00100.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA90.62e-28356412158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   d+p+ VN+KQy++Il+RR +Rak+e+e++l  k+rk ylheSRh hA+rR+RgsgGrF
  Zpz_sc00219.1.g00100.1.am.mk 356 DAPICVNPKQYEGILRRRRARAKAERENRL-VKGRKSYLHESRHLHAMRRARGSGGRF 412
                                   689***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-32354415IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.029355415IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-20358380IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.0E-26358412IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-20389412IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MRARYRHFLA PDLAFPVHAR CRLMPFTSVS TPPTPGYGTL PSYGVPDFIP SPTGYGAPGL  60
GALGPNTPPQ QAESSASGAP ATHALGSVDA DLVSPGSGAL SGDFPAPSSD HDVTTSPGLG  120
SPAAAPTTAS AAPAAPAPAQ QWPVVSRAVL GPVLTMSCRP TRHDKARRAT GPRHETVRLG  180
RAVPASPHLL ALMRCPSSLA LLARLEIPFK ARRGKATMMS FKNHQGFAAL NQASHGSGAP  240
LPCWAGPQLL YGEPAPLSPE ETRREGQFEV VPGAQSSPDP APPSAKRAAA PEVLKFSVFQ  300
SQGDPEAGGK GDKAPDHSTI IALQSPFPEY NGRFEIGMGQ SMSGGQMLLP LNVPADAPIC  360
VNPKQYEGIL RRRRARAKAE RENRLVKGRK SYLHESRHLH AMRRARGSGG RFLNTKKAGQ  420
GKETSAKEGN KAAPNARPGS FSPRLEQGNN QHNCPSRSSV SSGLSGSEAS SVYEHDDTDH  480
YNSSIEHLRT PFFTPQPSIM DGEHGAATIP SFKWATGYGC CEQLLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-15356444278NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00219.1.g00100.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677584.11e-108nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_020407730.11e-108nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_025796559.11e-107nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-107nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-107nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-120A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ia01146.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.12e-19nuclear factor Y, subunit A6