PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00210.1.g00490.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 370aa    MW: 38444.1 Da    PI: 7.2683
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00210.1.g00490.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.4e-10106131127
                                     --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                     +kt+lC+ f++ GtC+y  +C+FaHg+
  Zpz_sc00210.1.g00490.1.sm.mkhc 106 FKTKLCCKFRA-GTCPYVTNCNFAHGM 131
                                     69*********.*************95 PP
2zf-CCCH18.14.7e-06186211126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     yk + C+ f+    C+yGd C+F H+
  Zpz_sc00210.1.g00490.1.sm.mkhc 186 YKGRHCKKFYTEEGCPYGDACTFLHD 211
                                     78888********************7 PP
3zf-CCCH43.35.9e-14250275126
                                     --S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                     +kt++C+ +  tG+C++G++C+FaHg
  Zpz_sc00210.1.g00490.1.sm.mkhc 250 WKTRICNKWEMTGYCPFGSKCHFAHG 275
                                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-8103136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-14103138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028105132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014105131IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7106131IPR000571Zinc finger, CCCH-type
SMARTSM003560.3185212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629185213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-8185213IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7185213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-18243279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-10246280IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422249277IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-11250275IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDYSNAIHII PDAAGPDAWA NSAPPPAGGD SAIWATEDDY RQWNADPGSG GGGYGDWNSS  60
RAGSEQPPPG KKPRGGGGSS AGGGGGGDGS GGGSSSKSRA IGKMFFKTKL CCKFRAGTCP  120
YVTNCNFAHG MEELRKPPPN WQEIVAAHEE ATEQREEHQI PIVTSASVVA GSGDGGGGGA  180
QGGRAYKGRH CKKFYTEEGC PYGDACTFLH DEQSKARESV AISLSPSVGG GGYNAAASAN  240
GVQVQKPSNW KTRICNKWEM TGYCPFGSKC HFAHGAAELH KYGGGLVDLD GNAASTPDSK  300
QAGASAKAPT DAAAASNAIP PHADVYHLGI QSQRSGIGSQ RSGQVQRPIQ KWKGPDKISR  360
IYGDWIDENE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00210.1.g00490.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321178.10.0zinc finger CCCH domain-containing protein 56 isoform X2
SwissprotQ84UQ31e-178C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1B6PFN80.0A0A1B6PFN8_SORBI; Uncharacterized protein
STRINGPavir.Fb00417.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-98C3H family protein