PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00206.1.g00450.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 556aa MW: 59109.8 Da PI: 8.5464 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.4e-30 | 221 | 279 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gC+v+k+v+r+aed +v+++tYeg+Hnh+ Zpz_sc00206.1.g00450.1.am.mk 221 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCSVRKQVQRCAEDRTVLITTYEGSHNHP 279 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-33 | 205 | 281 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-27 | 213 | 281 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.861 | 215 | 281 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 220 | 280 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 222 | 279 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MTMSMRAEIK EVLVLFWVFS SSSSSSSLCG QLESTKVELR QSKEEIQRLR KIVSDLSARY 60 QSLHAHFVAF MQQQRNLEVP RPEQQLNVDP EKKEQDASPL PKQLISLDVG ADAAPSPGSS 120 LAGSALPPQL MDYSPGGTGT GNGGGRMPLP TFDQHRHRLH ERVGSPEEAP PPQHVTQGWL 180 ASPSKVPKFL PAKTPEPVPE AATMRKARVS VRARSEAAMI SDGCQWRKYG QKMAKGNPCP 240 RAYYRCTMAA GCSVRKQVQR CAEDRTVLIT TYEGSHNHPL PPAAMAMAST TAAAASMLLS 300 GSMPSADGSL MAGSNFLARA VLPCSSSVAT ISASAPFPTV TLDLTQPAPP AASSSCSLAE 360 PAQLKAALAE AARPVQLPQL FGQKLYDHGK LSAVQAAAGV KATDGGAIAD TVSAAAAITS 420 DPNFTAVLAA AITSYIGSSG TVQPMASGGA DNSYADFERS GWQHDTEGAE SISRFRCPSL 480 RSGHAFDTSP VHVGRSTVPW SLLNRHTVEE RRADLVTERT DEVEYCGRLD RPAPNSAPRQ 540 SSITLLGSRL LPRGSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-22 | 211 | 281 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-22 | 211 | 281 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00206.1.g00450.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 1e-139 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AP014961 | 1e-139 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963595.1 | 1e-146 | WRKY transcription factor 42 | ||||
Swissprot | Q9XEC3 | 1e-101 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A0E0L5U9 | 1e-153 | A0A0E0L5U9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G23690.1 | 1e-154 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12695 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 3e-60 | WRKY family protein |