PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00206.1.g00350.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 393aa MW: 41424.1 Da PI: 7.0463 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 4.1e-33 | 188 | 245 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Zpz_sc00206.1.g00350.1.am.mk 188 EDGYRWRKYGQKAVKHSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 245 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-34 | 172 | 247 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-28 | 179 | 247 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.674 | 182 | 247 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.4E-39 | 187 | 246 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-26 | 188 | 245 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 393 aa Download sequence Send to blast |
MSDARHDHGG HQRHLSGDFQ FHDDLASLFA QRPEAGTQPW FTDHLQASAL MLMDYDPFAG 60 EFDMPTVEEV KRELGMDAAA ASGAAGMLGG GGATSSTATP LTPNSMSLSS TSSEACGTAG 120 AGAGEESAGK CKKEDEGGDS KDGSADKGDR DMDDKNKKGA AKGKGEGEKR PRQPRFAFMT 180 KSEVDHLEDG YRWRKYGQKA VKHSPFPRSY YRCTTQKCPV KKRVERSFQD AAVVITTYEG 240 KHTHPIPATL RGSTHLLAGH HPHFHLPPPV GGAGFAYGRP CATAFDALGL LQPQPQQHHA 300 IQQLVSGGAG CAATGVQPQQ VNAGAMASRH AAADQLGLAS IVGTVAGGAA SATTAATSST 360 VPLRMQHFMA QDYAGLLQDM LPSFIQNDGG NNP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 178 | 248 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 178 | 248 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00206.1.g00350.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961203.1 | 1e-127 | probable WRKY transcription factor 28 | ||||
TrEMBL | A0A1E5VKW3 | 1e-133 | A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71 | ||||
STRING | Si022220m | 1e-126 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29860.1 | 9e-48 | WRKY DNA-binding protein 71 |