PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00200.1.g00260.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 327aa    MW: 36991.7 Da    PI: 6.4133
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00200.1.g00260.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.8e-51181621128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.................kvka..eekewyf 60 
                                     lppGfrFhPtdeelvv+yL++kv++++l++  +i+evd+yk++PwdLp                  k  a  ++kewyf
  Zpz_sc00200.1.g00260.1.sm.mkhc  18 LPPGFRFHPTDEELVVHYLCRKVARQQLPV-PIIAEVDLYKFDPWDLPDltldavadldslraraeK--AlfGRKEWYF 93 
                                     79****************************.88***************5589999999988775443..145889**** PP

                             NAM  61 FskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     F++rd+ky++g+r+nra+ +gyWkatg dk++  k + ++ g+kk Lvfy+g+ap+g+ktdW+mheyrl
  Zpz_sc00200.1.g00260.1.sm.mkhc  94 FTPRDRKYPNGSRPNRAAGRGYWKATGADKPIAPKgSPKAAGIKKALVFYSGKAPRGVKTDWIMHEYRL 162
                                     *********************************98556779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-5914188IPR003441NAC domain
PROSITE profilePS5100559.17118188IPR003441NAC domain
PfamPF023656.8E-2719162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVAAEGSGRR DAEAELNLPP GFRFHPTDEE LVVHYLCRKV ARQQLPVPII AEVDLYKFDP  60
WDLPDLTLDA VADLDSLRAR AEKALFGRKE WYFFTPRDRK YPNGSRPNRA AGRGYWKATG  120
ADKPIAPKGS PKAAGIKKAL VFYSGKAPRG VKTDWIMHEY RLADADRGPG KKGSQKLDEW  180
VLCRLYNKKN NWEKVKVEEL QEQETAPHHR QRKEEIMDTL ADTMSDSIQT HGSEIDNAPD  240
MQNSFGDMAQ GQATVPNSMV TVKEDNDWFT DMNFDELQAS YMNMGQMVNP SLGQTVNPAA  300
GQDYHAGYLQ SISAPQMRMW QTILPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-91101947174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00200.1.g00260.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170031e-126KM017003.1 Miscanthus lutarioriparius NAC4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816775.11e-178NAC domain-containing protein 68-like
SwissprotQ52QH41e-158NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A220T1T20.0A0A220T1T2_9POAL; Stress responsive NAC transcription factor
STRINGPavir.Ea03233.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-82NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]