PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00189.1.g00210.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 552aa MW: 59772.3 Da PI: 8.4375 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1.1e-17 | 361 | 449 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 ffkv+ p+ +++ l +p +f e+ ++ ++ + ++l+ +sg sW+v l + s++ v+t+GWkeF++++ L g f+ Zpz_sc00189.1.g00210.1.am.mk 361 FFKVFFPEQSGEG--LKIPSTFH-EYvEKAPN--RVVSLRGPSGHSWRVVL--TTDSQGLVFTQGWKEFARDHSLIPGHFL 434 8999988887765..9******9.55365544..48***************..**************************** PP EEEE-SSSEE..EEEEE CS B3 81 vFkldgrsefelvvkvf 97 +F++dg sef v vf Zpz_sc00189.1.g00210.1.am.mk 435 LFTYDGCSEF--SVAVF 449 ****986776..66665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 359 | 450 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-19 | 360 | 450 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.5E-14 | 361 | 455 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-15 | 361 | 447 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.20E-16 | 361 | 449 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 374 | 452 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 552 aa Download sequence Send to blast |
MQGASVGEDG RRPGAVAGRE EGGTDAAHTL LSVLPFPCDP PLHLFSGNAL DSLHLLASLL 60 SPSPTLSSAH VVDASFLAAS TIDFDAAARS LFGHLTVARA APSREEAPRA HLRRGRHRCG 120 PGRRGGETGV EGAQIRWGQM NRWGEQSVGD GRWRSGVVLA RDVVQKIHFG GVPKVSPQVF 180 VPRWRRTPLE PGHRHCQRNC RLPLLTYSSC KGGGAAVSLT LERIGDGGMP CLACWCFGEV 240 GKPYPSSDVG GDSEVSQNSE FRCCVTRGED AMVAVTRRPE IRAPAGVRQP EIETEGHTKQ 300 QGSSSAAAAT AVMRNGMGKE KEKQVEKGRD RRKEKQSGKE QRKEIAREVQ DDVPVAAGEQ 360 FFKVFFPEQS GEGLKIPSTF HEYVEKAPNR VVSLRGPSGH SWRVVLTTDS QGLVFTQGWK 420 EFARDHSLIP GHFLLFTYDG CSEFSVAVFT PLGVEDKAAL KVQPCKELLV KQEEEEGTLD 480 VAADGTLEAS GTPFVEGNGA TTGKRVRDMD YEMTSGTAQK RHSSVQEKPK KKKPEATAAI 540 FPRNAHGVFH SG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00189.1.g00210.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34400.1 | 7e-16 | B3 family protein |