PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00188.1.g00540.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 395aa    MW: 43381.4 Da    PI: 6.5885
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00188.1.g00540.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.21.2e-1027739077374
                          GRAS  77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskee 157
                                   ++aa++ f++++P+l+++  +aNq +le +e e+ vH++D++    +QW+ Ll+ +a+Rpegpp+lR+Tgv++    ++e 
  Zpz_sc00188.1.g00540.1.am.mk  77 VAAARRHFVDLCPFLRLAGAAANQSVLEVMEAEKVVHVVDLGGADATQWLELLHLFAARPEGPPHLRLTGVSE----HREI 153
                                   4567888******************************************************************....9*** PP

                          GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.....................des 217
                                   l +t+  L+k Ae+l+vpf+fn+ v++rl++l++e+Lrvk+gEala+ ++lqlh ll                     +  
  Zpz_sc00188.1.g00540.1.am.mk 154 LTQTAMVLSKEAERLDVPFQFNP-VVTRLDTLDVESLRVKTGEALAITSSLQLHCLLasdddsaavvgkdkdsrrspeSGL 233
                                   ***********************.79***********************************************99975222 PP

                          GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                    +++s+ d++L ++++lsPk+vvv+eqea+hn++ + erf+eal+yy+alfd+le+ ++r s er+ vEr +lg+ei+n+v
  Zpz_sc00188.1.g00540.1.am.mk 234 SPSTSRVDAFLGALWGLSPKIVVVTEQEASHNAPALTERFVEALNYYAALFDCLEVVAARGSVERARVERWMLGEEIKNIV 314
                                   33444799************************************************************************* PP

                          GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   ac gaerrerhe+l++W +r+e aGF+ vpls++a  qa++  +  + dg++v ee+gs++l+W+dr+++svSaWr
  Zpz_sc00188.1.g00540.1.am.mk 315 ACDGAERRERHERLGRWARRMEGAGFGRVPLSYYALLQARRAAQGLGCDGFKVREEKGSFFLCWQDRAIFSVSAWR 390
                                   ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.6491370IPR005202Transcription factor GRAS
PfamPF035144.2E-10077390IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVQYDEGSSS SVTSSPRRNF SSMPLHPAAA SPTPPWLLRD LRSDERGLIL IHLLLNGAAA  60
ASAGRLDAVD AALEHIVAAA RRHFVDLCPF LRLAGAAANQ SVLEVMEAEK VVHVVDLGGA  120
DATQWLELLH LFAARPEGPP HLRLTGVSEH REILTQTAMV LSKEAERLDV PFQFNPVVTR  180
LDTLDVESLR VKTGEALAIT SSLQLHCLLA SDDDSAAVVG KDKDSRRSPE SGLSPSTSRV  240
DAFLGALWGL SPKIVVVTEQ EASHNAPALT ERFVEALNYY AALFDCLEVV AARGSVERAR  300
VERWMLGEEI KNIVACDGAE RRERHERLGR WARRMEGAGF GRVPLSYYAL LQARRAAQGL  360
GCDGFKVREE KGSFFLCWQD RAIFSVSAWR GRRID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-497739294380Protein SCARECROW
5b3h_D5e-497739294380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00188.1.g00540.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819415.10.0scarecrow-like protein 3
RefseqXP_025819416.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-137SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2S3HN370.0A0A2S3HN37_9POAL; Uncharacterized protein
TrEMBLA0A2T7DBR70.0A0A2T7DBR7_9POAL; Uncharacterized protein
TrEMBLA0A3B6EPZ70.0A0A3B6EPZ7_WHEAT; Uncharacterized protein
STRINGSb03g045660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-114scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]