PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00187.1.g00230.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 583aa MW: 64096.4 Da PI: 11.3355

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00187.1.g00230.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	106.3	1.7e-33	209	263	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + ++ r ++ntkfCy+nny+++qPr+fCk C+ryWt+GGalrnvPvG+grrkn+ Zpz_sc00187.1.g00230.1.am.mk 209 QPTVKREAARNTKFCYFNNYNVNQPRHFCKDCHRYWTAGGALRNVPVGAGRRKNR 263 556788899********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	24.288	210	264	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-19	214	263	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-25	216	263	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MPRSWPWLRK ASRTSTPRQV FMGFFPHLKE TTQPCYQVHS LPNLLAAGMD TASQQCLYKN 60 GEILLESQTP HTPPPSSSST SAREPSAAIT ITLNKLVLLG RRRERNRPRI VSDSFRRRRT 120 FLPLPRFLPA AQPIFSFGSC ACLLPRPISW PRPPRFVVWM LSHVETARGA GGIKLFGKVI 180 TQCAAPAPSQ EDPASRAAFV RERPDESEQP TVKREAARNT KFCYFNNYNV NQPRHFCKDC 240 HRYWTAGGAL RNVPVGAGRR KNRPLGPVVA AHHANHHQLH HHHHPAAAAA GLVLGFPGDP 300 SSLASPVYAD RWPVCPERRA SAVSVPVRGQ PSLRLGRGPD EQAASSPFGK RHHQILQTSD 360 DPNAHSTISC GSPECQRDPM PARRHSRIYF DCAVPTSMTV GKKRLATWAR AHFPAARASA 420 FGPDFTAAGR PGAIVVGSCA AGAGREGTFW LCCLLDWTGR REQAARKLCH GSDLLLAGIT 480 LDTKSWCVKR AGRLPGGVNF IAKTRWFVPR RYRCTLSTRA VASVVALAVP SHSRPAAFPQ 540 KRRKRTGGTT RPLASAELQA PVESINPDGA WKHGTRHGTS YCA

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MPRSWPWLRK ASRTSTPRQV FMGFFPHLKE TTQPCYQVHS LPNLLAAGMD TASQQCLYKN  60
GEILLESQTP HTPPPSSSST SAREPSAAIT ITLNKLVLLG RRRERNRPRI VSDSFRRRRT  120
FLPLPRFLPA AQPIFSFGSC ACLLPRPISW PRPPRFVVWM LSHVETARGA GGIKLFGKVI  180
TQCAAPAPSQ EDPASRAAFV RERPDESEQP TVKREAARNT KFCYFNNYNV NQPRHFCKDC  240
HRYWTAGGAL RNVPVGAGRR KNRPLGPVVA AHHANHHQLH HHHHPAAAAA GLVLGFPGDP  300
SSLASPVYAD RWPVCPERRA SAVSVPVRGQ PSLRLGRGPD EQAASSPFGK RHHQILQTSD  360
DPNAHSTISC GSPECQRDPM PARRHSRIYF DCAVPTSMTV GKKRLATWAR AHFPAARASA  420
FGPDFTAAGR PGAIVVGSCA AGAGREGTFW LCCLLDWTGR REQAARKLCH GSDLLLAGIT  480
LDTKSWCVKR AGRLPGGVNF IAKTRWFVPR RYRCTLSTRA VASVVALAVP SHSRPAAFPQ  540
KRRKRTGGTT RPLASAELQA PVESINPDGA WKHGTRHGTS YCA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	118	RRRERNRPRIVSDSFRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00187.1.g00230.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN393718	2e-64	JN393718.1 Sorghum bicolor clone Sbdof12 Dof (Dof) gene, partial cds.
GenBank	KC582409	2e-64	KC582409.1 Sorghum bicolor dof12 protein (dof12) gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6495	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34140.1	8e-30	Dof family protein