PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00175.1.g00570.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 298aa    MW: 32914 Da    PI: 5.914
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00175.1.g00570.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.24.6e-25102163159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +dDg+ WrKYGqKe+  se+pr Y+rCt++   gC++k++v+rs+ +p++  itY geH+++
  Zpz_sc00175.1.g00570.1.am.mk 102 MDDGFIWRKYGQKEICYSEYPRLYFRCTYKddrGCMAKRQVQRSSANPSLYLITYFGEHTCR 163
                                   59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.98997160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-2497163IPR003657WRKY domain
SuperFamilySSF1182902.09E-2399164IPR003657WRKY domain
SMARTSM007742.5E-35102164IPR003657WRKY domain
PfamPF031062.1E-23103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDRACSPTAC AASKLVSKGR DSAAVLQVLL GRHPAVPTAN EMPDGALRDL TEQILHCCDR  60
ALAALRSASR KRSLANAHLA PSSKRTRVSC GEKGRVEKQA TMDDGFIWRK YGQKEICYSE  120
YPRLYFRCTY KDDRGCMAKR QVQRSSANPS LYLITYFGEH TCRRHDTEPP APAPFVINFG  180
SSTCGDGHQP NVLPWRPSCG DDGPVVSETS DLCNSQEEML AALIEQSTPV SEQVGKGSPG  240
WDNLDGCLDW EFADDDSSFD LMMRTTGRAD DADEKQNDYC LQDVHAAMLN RIALVLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20101163769OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00175.1.g00570.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.11e-81probable WRKY transcription factor 70
TrEMBLA0A2T7ECG03e-81A0A2T7ECG0_9POAL; Uncharacterized protein
STRINGPavir.J41073.1.p7e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.13e-23WRKY DNA-binding protein 62