PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00174.1.g00600.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 273aa MW: 30676.8 Da PI: 6.8594 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 64.8 | 1.5e-20 | 89 | 140 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rl Wt eL e+F+ea+e L G ++A+P++i++ m+vk+Lt ++++SHLQk+R+ Zpz_sc00174.1.g00600.1.sm.mk 89 RLIWTVELQEKFLEAIEVL-GDKNAVPSRIVKQMNVKDLTAKQIASHLQKHRS 140 99*****************.9******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.955 | 84 | 143 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 85 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-15 | 88 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-19 | 89 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-7 | 92 | 139 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MQISYGVVSQ CGIVSKAMYA NDNEEASSEC MAVGACFHLP KPLTAGSFNM LRDTARQHKS 60 RRAAIKQQHL KGHTNSTKRD RFHSKKLDRL IWTVELQEKF LEAIEVLGDK NAVPSRIVKQ 120 MNVKDLTAKQ IASHLQKHRS RVKAYQRKFQ QNASKKAVPE LIRSEHNEST TVDEAWNEAL 180 VWGTQPSLVN IIEPITQETI VEETLVPDPV MQSAQTQEAA VGDAQVPDPV VQFVQTQEVA 240 VGAAPLHDHV MQFTQDDVYW SLSPSLADYD MLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00174.1.g00600.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660566.2 | 4e-33 | uncharacterized protein LOC101775816 isoform X2 | ||||
TrEMBL | A0A368QZ01 | 9e-32 | A0A368QZ01_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db00207.1.p | 4e-32 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13017 | 19 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 1e-13 | GOLDEN2-like 2 |