PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00172.1.g00340.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 412aa    MW: 44496.4 Da    PI: 6.5103
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00172.1.g00340.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-103113673589
                                   EEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                            B3  35 tltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                                    l + d++   +W++k++y  ++ks++y+l+    eFvk ++L++gD++v++ ++r++
  Zpz_sc00172.1.g00340.1.sm.mk 311 ILEMDDLELpDVWKFKYRYwpNNKSRMYILE-SAGEFVKRHKLEAGDVFVIYQHKRTG 367
                                   455555333589*******888888888888.99*****************9544433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0077285380IPR003340B3 DNA binding domain
CDDcd100172.33E-11294368No hitNo description
Gene3DG3DSA:2.40.330.101.2E-13295375IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-10296372IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MADATGSSSG AGAGAGAATG HGDLGRGVTQ GQCQVYLTSS TNRIAPNAAN IYPPTHQYPI  60
GLIPAQRPMN SSPIAAPPQQ LVPPPQYHVV QSQPPPIAGR YQHQDYPAYG NTAPSTTPVG  120
FAGWRMYSNT LMSFSQPVPL SGGGGNSNIS VVNSNGFHQN SSSYATTMWT NYVPSNQPYY  180
TNYAPAATIN PVLQAPAIQN INNHQERDLG FAPSFGATAP TVPAIHYEGM PQRTTNSSTA  240
QLFQEVKNST FRTSGPGGEI EGSEASEEQD PAPELEAQNQ LGQGFRDINA TDNTRDAEAN  300
LPALIDKDGI ILEMDDLELP DVWKFKYRYW PNNKSRMYIL ESAGEFVKRH KLEAGDVFVI  360
YQHKRTGRHV ARAVKAIPQS SNLNLLECQC MREGRSSEEC GFAVSAPPPK KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-2329538725116B3 domain-containing transcription factor FUS3
6j9b_D6e-2329538725116B3 domain-containing transcription factor FUS3
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00172.1.g00340.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825471.12e-90putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3L6Q9281e-95A0A3L6Q928_PANMI; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-22B3 family protein