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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00167.1.g00390.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 28846.3 Da PI: 4.6567 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 205 | 224 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C +C+k+F++ ++ H+ Zpz_sc00167.1.g00390.1.sm.mk 205 YTCDHCNKRFKSIESIYGHM 224 9**********988877777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.93E-5 | 203 | 231 | No hit | No description |
PROSITE profile | PS50157 | 9.681 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEPQNYDLAT IIVYPKPWTK TVLSSQSLIL QTNSPKQGSD GELFVNRVAS SGVVLKFMVG 60 KNEALPSPPN DLSHELAFSK KLEAGGPLEK IEARCTKSVS VQSEIRNEES GENNIIPLVD 120 STMGTSNPDE ISRVEMMSNT SKEGEIMVSS KSVAMDTCMA GMDETHSSQN AKICTTEKVT 180 DEICYKGNHE VSASEKSIIC PSEEYTCDHC NKRFKSIESI YGHMGGHRRD EYSLIRTTIE 240 QPGATETTNS KLEYEEVQEF V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00167.1.g00390.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |