PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00166.1.g00190.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 218aa    MW: 24997.5 Da    PI: 9.4646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00166.1.g00190.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-18652148
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                                  lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L 
  Zpz_sc00166.1.g00190.1.am.mk  6 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELA 52
                                  79****************************.99*************95 PP
2NAM64.43.4e-20539981128
                           NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   gyWk+tgkd++v   +++++g+kktLv+ykgrap+g++t+Wvmheyr+
  Zpz_sc00166.1.g00190.1.am.mk  53 GYWKSTGKDRRVSY-QNRAIGMKKTLVYYKGRAPQGVRTNWVMHEYRI 99 
                                   9************9.8999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.7981122IPR003441NAC domain
SuperFamilySSF1019412.35E-464123IPR003441NAC domain
PfamPF023651.6E-21799IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAPADLPPGF RFHPTDEELV NYYLKRKVHG LSIELDIIPE VDLYKCEPWE LAGYWKSTGK  60
DRRVSYQNRA IGMKKTLVYY KGRAPQGVRT NWVMHEYRIE ESECDNTMGI QDLYALCRVF  120
KKNAAVGEFE KQAPPCTRLG NERRRTGRRL DERMQTTDQT APAPPTAQAV VYRKFLTKWL  180
NRKVGPELVP SQEHAFVWGR WAPAAAVSTD GSNFGSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-35112612169NO APICAL MERISTEM PROTEIN
1ut4_B4e-35112612169NO APICAL MERISTEM PROTEIN
1ut7_A4e-35112612169NO APICAL MERISTEM PROTEIN
1ut7_B4e-35112612169NO APICAL MERISTEM PROTEIN
3swm_A5e-35612620172NAC domain-containing protein 19
3swm_B5e-35612620172NAC domain-containing protein 19
3swm_C5e-35612620172NAC domain-containing protein 19
3swm_D5e-35612620172NAC domain-containing protein 19
3swp_A5e-35612620172NAC domain-containing protein 19
3swp_B5e-35612620172NAC domain-containing protein 19
3swp_C5e-35612620172NAC domain-containing protein 19
3swp_D5e-35612620172NAC domain-containing protein 19
4dul_A4e-35112612169NAC domain-containing protein 19
4dul_B4e-35112612169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00166.1.g00190.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375962e-49AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBankAP0055642e-49AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
GenBankAP0149652e-49AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126172e-49CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460636.17e-84NAC domain-containing protein 45
SwissprotQ9FFI52e-59NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0A9HWW62e-82A0A0A9HWW6_ARUDO; NAC017
TrEMBLC5X7Q02e-82C5X7Q0_SORBI; Uncharacterized protein
STRINGSb02g032230.13e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6782622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.14e-70NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]