PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00165.1.g00600.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 883aa MW: 94706.5 Da PI: 9.0023

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00165.1.g00600.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167	6.5e-52	453	581	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat Zpz_sc00165.1.g00600.1.am.mk 453 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRAT 532 69**************************.9***********952444443456****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++g+Wkatg+dk+++s ++ +g++ktLvfykgrap+g+k+dW+mheyrl Zpz_sc00165.1.g00600.1.am.mk 533 AAGFWKATGRDKAIYS-CTRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 581 ************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-53	448	583	IPR003441	NAC domain
PROSITE profile	PS51005	51.483	453	683	IPR003441	NAC domain
Pfam	PF02365	2.8E-27	454	581	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence Send to blast
MGDERSSSSL TEFASTARSR RAEYRSSYMS PPAGCSGFVL LSRCAVATSN SRREISAEER 60 EGGHDRSSAP LLSQPEKGKG ELAIEGIDRH HNANKHHAVL LACRYTSIIC PETRDWTTSS 120 VSFLGTASTG ARSAAGEQRR CRAPCAGGGD RNIITSGLRP PPPPPPPPPG RWGGDADAAR 180 DRYTLTAIKR TGFTGHDAAF MGIGERECYY YAYSNYVALR ADYHLTDGCN SPASTAVCED 240 PDGTDTPRDY HRSYTHQTRQ AVSPAISADS DGQRYVRAKR KATATRGTVQ ANERTEQLEK 300 NTGISFSVAV AGAVIVVAVV AAVVTLAIPG THATAAQHHS IDGRVILPRP AGVTRRRFRL 360 AMLFRRFLRS CVMALDGAPS PFPRPLPHAP PVATHRLPPS LPPFLPPRPG WRGPPSSLAP 420 HCIVGFSLFA FSLMVGGTSL ASAKLIPLGS SAVPPGFRFH PTEEELLTYY LKKKVASERI 480 DLDVIRDVDL NKLEPWDIQE KCRIGSGPQN DWYFFSHKDK KYPTGTRTNR ATAAGFWKAT 540 GRDKAIYSCT RRIGMRKTLV FYKGRAPHGQ KSDWIMHEYR LDDVQTPAAG VDPYYPSPPP 600 PPALELGLGV PGLLVEISVA GGEVVGLGSP RKATEFGHQQ DHQTCVSKGQ PKTAGRVRMR 660 GGAAAGDQAA QEEGWVICRV FKKKNLVLHH GQSSGGGGTT TAATAASKTA AATTMESSPT 720 SNGSSVTVTD QVKAQLLHSA SDDALDHILQ YIGRSCHTNN EQDTKPPPAL QLDHHLAATT 780 ATACPAGSSF YGRFMKLPPL EHVGAGLLPN PAGYAADASG IADWDSLDRL AAYEFNGLSD 840 ASKNMVAFLD EPNAAAGTGD GDLWSLARSS VSSLHPDLTR NNV

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence Send to blast

MGDERSSSSL TEFASTARSR RAEYRSSYMS PPAGCSGFVL LSRCAVATSN SRREISAEER  60
EGGHDRSSAP LLSQPEKGKG ELAIEGIDRH HNANKHHAVL LACRYTSIIC PETRDWTTSS  120
VSFLGTASTG ARSAAGEQRR CRAPCAGGGD RNIITSGLRP PPPPPPPPPG RWGGDADAAR  180
DRYTLTAIKR TGFTGHDAAF MGIGERECYY YAYSNYVALR ADYHLTDGCN SPASTAVCED  240
PDGTDTPRDY HRSYTHQTRQ AVSPAISADS DGQRYVRAKR KATATRGTVQ ANERTEQLEK  300
NTGISFSVAV AGAVIVVAVV AAVVTLAIPG THATAAQHHS IDGRVILPRP AGVTRRRFRL  360
AMLFRRFLRS CVMALDGAPS PFPRPLPHAP PVATHRLPPS LPPFLPPRPG WRGPPSSLAP  420
HCIVGFSLFA FSLMVGGTSL ASAKLIPLGS SAVPPGFRFH PTEEELLTYY LKKKVASERI  480
DLDVIRDVDL NKLEPWDIQE KCRIGSGPQN DWYFFSHKDK KYPTGTRTNR ATAAGFWKAT  540
GRDKAIYSCT RRIGMRKTLV FYKGRAPHGQ KSDWIMHEYR LDDVQTPAAG VDPYYPSPPP  600
PPALELGLGV PGLLVEISVA GGEVVGLGSP RKATEFGHQQ DHQTCVSKGQ PKTAGRVRMR  660
GGAAAGDQAA QEEGWVICRV FKKKNLVLHH GQSSGGGGTT TAATAASKTA AATTMESSPT  720
SNGSSVTVTD QVKAQLLHSA SDDALDHILQ YIGRSCHTNN EQDTKPPPAL QLDHHLAATT  780
ATACPAGSSF YGRFMKLPPL EHVGAGLLPN PAGYAADASG IADWDSLDRL AAYEFNGLSD  840
ASKNMVAFLD EPNAAAGTGD GDLWSLARSS VSSLHPDLTR NNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-43	453	581	15	140	Stress-induced transcription factor NAC1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00165.1.g00600.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT075080	1e-179	KT075080.1 Panicum virgatum secondary wall NAC master switch (SWN1) mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32770.1	6e-73	NAC domain containing protein 12