PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00164.1.g00150.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 573aa    MW: 62139.9 Da    PI: 7.8739
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00164.1.g00150.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-18252307256
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   ++++++t+eq+++Le  Fe+ ++++  e+++eLA++lg+  rqV vWFqNrRa+++
  Zpz_sc00164.1.g00150.1.am.mk 252 KTKRRLTAEQVQALEVSFEEeKQKLEPERKRELARRLGIAPRQVAVWFQNRRARWR 307
                                   67889**************98**********************************9 PP
2HD-ZIP_I/II114.46.9e-37253344292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    krrl++eqv++LE sFeee+ kLeperK elar+Lg+ prqvavWFqnrRAR++tkqlE+d+ +L+ a+d+l + +++L 
  Zpz_sc00164.1.g00150.1.am.mk 253 TKRRLTAEQVQALEVSFEEEKqKLEPERKRELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFYSLRVAHDELLAGRDALV 333
                                   69****************9988*********************************************************** PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++Lr+++ 
  Zpz_sc00164.1.g00150.1.am.mk 334 ADNDRLRSQVI 344
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-16247311IPR009057Homeodomain-like
PROSITE profilePS5007117.508248309IPR001356Homeobox domain
SMARTSM003891.4E-16250313IPR001356Homeobox domain
CDDcd000865.76E-16252310No hitNo description
PfamPF000462.0E-15252307IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-18255314IPR009057Homeodomain-like
PRINTSPR000311.6E-5280289IPR000047Helix-turn-helix motif
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5289305IPR000047Helix-turn-helix motif
PfamPF021833.2E-11309351IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
LTTQPRCRAR PCAHDRPSPE HTAPEHFGYA RTSVRPDRAA PDCPGARQRC PAPVLDCPAD  60
VITTNFHFIL LLARPSTRGL SFRERLSATK STLSSRQLVI VSGRRVAQAC TDETPIHPRR  120
RCYGVVAVHH EVINDPHAVE HQLLPPQIPR RRVILPIKLA PAGWTATSVF QEEVEERNSA  180
ASFCATGDGG SGGQVLLFGG GGGFRGVGAA PMAASAGAEN GRRKRPCLTA HEELRLDQLC  240
GLEYELQGVP EKTKRRLTAE QVQALEVSFE EEKQKLEPER KRELARRLGI APRQVAVWFQ  300
NRRARWRTKQ LEQDFYSLRV AHDELLAGRD ALVADNDRLR SQVINLTEKL QAKEQTAPSA  360
ATGTKTMEAA VLLVQLDDDQ LRETISGEVW PAQGFPGGAN SASPESYFAG APSPPSSSEG  420
DCGDEGSAPL LPDAMLLAVA AQLEHGGGHD AGEDSWEWQA GRTGLKKIIR LCTFNCFGSA  480
GSGPSAGRGE VGDGTGPRFS RGPQGPSSFF SGGPSTRALN PLLHFRRAPS IPDLAPRSMR  540
RTSGSMDIIS AVSVEMEEEE SHHAKGHVRM DYA
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00164.1.g00150.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-80AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J04192.1.p6e-85(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-40homeobox 1