PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00161.1.g00440.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 212aa    MW: 24514.3 Da    PI: 6.1743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00161.1.g00440.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.4e-35141042101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+ye+++d++++ ++ w+ +g+sfvv ++ +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+
  Zpz_sc00161.1.g00440.1.sm.mk  14 FLSKTYEMVDDPATNAVVAWTPSGTSFVVANQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFA 85 
                                   9***************************************************************9998.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++ F +g+++ l++i+r+k
  Zpz_sc00161.1.g00440.1.sm.mk  86 NEDFIRGQRHRLKNIRRRK 104
                                   *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.21E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.3E-3810103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-211437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-215264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEESGGGESS LPPFLSKTYE MVDDPATNAV VAWTPSGTSF VVANQADFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEDFI RGQRHRLKNI RRRKPIFSHS SHTQGSPVAD  120
HERREYEEEI LRLKDDNATL RSELENNAEK KLLTERRMQE LEDKLIFLED QTGPSRDHVE  180
DPPAVAPGSS LGQMHIRRPN QSAEMEIIRL NK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-30610312120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00161.1.g00440.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034561e-146KT203456.1 Paspalum vaginatum clone SpCT4 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456359.11e-105heat stress transcription factor A-4b
SwissprotQ94J165e-93HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1W0VZI61e-103A0A1W0VZI6_SORBI; Uncharacterized protein
TrEMBLC5XK401e-103C5XK40_SORBI; Uncharacterized protein
STRINGSb03g034630.11e-104(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.13e-53HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]