PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00157.1.g00690.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 22700.2 Da PI: 9.1197 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp Cg F L H+r+H Zpz_sc00157.1.g00690.1.sm.mk 122 HECPVCGLEFAVGQALGGHMRRH 144 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.71E-8 | 57 | 81 | No hit | No description |
Pfam | PF13912 | 1.6E-12 | 58 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.71E-8 | 117 | 144 | No hit | No description |
Pfam | PF13912 | 2.3E-10 | 121 | 146 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MSKRDRPAVA WETEALGAAE TARVLVLLAQ AQQRGLMQLR HQGHGEPFQA GQLASSRVFE 60 CKTCSRQFPT FQALGGHRAS HKRPRLQLHH QPAVGDLCLG REPLPPPPRP PSSQQPVKPR 120 VHECPVCGLE FAVGQALGGH MRRHRAEADG GEAPTTKLLP ASEKVCDVAG GICLDLNLTP 180 SENCAKCRNV LVRGAAGKGV HKTLAMLDCS L |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00157.1.g00690.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003231 | 2e-34 | AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11. | |||
GenBank | AP014957 | 2e-34 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818717.1 | 2e-76 | zinc finger protein ZAT12-like | ||||
TrEMBL | A0A3L6SKA7 | 3e-77 | A0A3L6SKA7_PANMI; Zinc finger protein ZAT12 | ||||
STRING | Pavir.J34723.1.p | 2e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-27 | C2H2 family protein |