PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00155.1.g00360.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 250aa MW: 27950.1 Da PI: 8.7937 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 28 | 85 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ Zpz_sc00155.1.g00360.1.am.mkhc 28 YVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 6789***************************************************996 PP | |||||||
2 | START | 71.4 | 2.3e-23 | 129 | 249 | 2 | 120 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakae 80 +aee+++e+v+ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v ++++ +e+l d++ W ++++++e Zpz_sc00155.1.g00360.1.am.mkhc 129 IAEETLTEFVSKATGTAIDWVQMPGMKPGPDSFGIVSVSHGCRGVAARACGLVNLEPTKILEILKDRP-SWFRDCRSQE 206 789*******************************************************9998888888.********** PP EEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TT CS START 81 tlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlga 120 + + g g+++l ++++ a++++v+ Rdf+++Ry+ ++++ Zpz_sc00155.1.g00360.1.am.mkhc 207 IFTMLPAGngGTIELVYMQMFAPTTVVSaRDFWTLRYTATMED 249 ******9999****************999********988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-20 | 7 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.564 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 24 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.12E-16 | 27 | 87 | No hit | No description |
SuperFamily | SSF46689 | 3.21E-17 | 27 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.9E-17 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 8.11E-5 | 79 | 118 | No hit | No description |
PROSITE profile | PS50848 | 13.111 | 119 | 250 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.1E-9 | 127 | 250 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.33E-17 | 127 | 250 | No hit | No description |
Pfam | PF01852 | 2.8E-20 | 129 | 249 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MAAAVAMRSG SNDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPT SARRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLS AMNKLLLEEN ERLQKQVSQL 120 VHENALLSIA EETLTEFVSK ATGTAIDWVQ MPGMKPGPDS FGIVSVSHGC RGVAARACGL 180 VNLEPTKILE ILKDRPSWFR DCRSQEIFTM LPAGNGGTIE LVYMQMFAPT TVVSARDFWT 240 LRYTATMEDG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00155.1.g00360.1.am.mkhc |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632709.1 | 1e-155 | homeobox-leucine zipper protein HOX10 | ||||
Swissprot | Q6TAQ6 | 1e-156 | HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A1D6JKR7 | 1e-157 | A0A1D6JKR7_MAIZE; Rolled leaf2 | ||||
STRING | OS03T0109400-02 | 1e-154 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 1e-131 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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