PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00143.1.g00030.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 217aa    MW: 23575.8 Da    PI: 10.7852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00143.1.g00030.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.97.3e-2748148199
                                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                   f+kv tpsdv+k++rlv+pk+fae+h    g   + ++ l + d +g   W+++++y+++s++yv+tkGW+++v++++L +
  Zpz_sc00143.1.g00030.1.sm.mk  48 FEKVVTPSDVGKLNRLVVPKHFAEKHlpllGAAARAGTVLCFHDARGhAAWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAA 128
                                   99****************************878889999*****999799******************************* PP

                                   T-EEEEEE-SSSEE..EEEEE-S CS
                            B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                   gD+v F    r++++l++  +r+
  Zpz_sc00143.1.g00030.1.sm.mk 129 GDTVSFC---RDGARLYIDCRRR 148
                                   *******...4667788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-3444151IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-2646139No hitNo description
SuperFamilySSF1019364.84E-2746143IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.73148149IPR003340B3 DNA binding domain
PfamPF023621.1E-2348148IPR003340B3 DNA binding domain
SMARTSM010191.3E-1748149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MALTLAQESW KSSELGGGAG GLAAEGSNSN QRRPQSHGGG GGVRERLFEK VVTPSDVGKL  60
NRLVVPKHFA EKHLPLLGAA ARAGTVLCFH DARGHAAWRF RYSYWGSSQS YVMTKGWSRY  120
VRDKRLAAGD TVSFCRDGAR LYIDCRRRAK RAQAASLLFG ATAAAAAANN NNKAQQPLES  180
AGIIDITGED ARRGRRLRLF GVDLELRAEP LLLDLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-41441504115B3 domain-containing transcription factor NGA1
5os9_B3e-41441504115B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00143.1.g00030.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269655e-81KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681403.14e-59B3 domain-containing protein Os06g0107800
SwissprotQ5VS552e-55Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A1E5VK676e-62A0A1E5VK67_9POAL; B3 domain-containing protein
STRINGPavir.Db02478.1.p3e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.14e-42B3 family protein