|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Zpz_sc00143.1.g00030.1.sm.mk |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
Family |
B3 |
Protein Properties |
Length: 217aa MW: 23575.8 Da PI: 10.7852 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zpz_sc00143.1.g00030.1.sm.mk | genome | ZGD | View Nucleic Acid |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 84.9 | 7.3e-27 | 48 | 148 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLke 76
f+kv tpsdv+k++rlv+pk+fae+h g + ++ l + d +g W+++++y+++s++yv+tkGW+++v++++L +
Zpz_sc00143.1.g00030.1.sm.mk 48 FEKVVTPSDVGKLNRLVVPKHFAEKHlpllGAAARAGTVLCFHDARGhAAWRFRYSYWGSSQSYVMTKGWSRYVRDKRLAA 128
99****************************878889999*****999799******************************* PP
T-EEEEEE-SSSEE..EEEEE-S CS
B3 77 gDfvvFkldgrsefelvvkvfrk 99
gD+v F r++++l++ +r+
Zpz_sc00143.1.g00030.1.sm.mk 129 GDTVSFC---RDGARLYIDCRRR 148
*******...4667788888876 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MALTLAQESW KSSELGGGAG GLAAEGSNSN QRRPQSHGGG GGVRERLFEK VVTPSDVGKL 60 NRLVVPKHFA EKHLPLLGAA ARAGTVLCFH DARGHAAWRF RYSYWGSSQS YVMTKGWSRY 120 VRDKRLAAGD TVSFCRDGAR LYIDCRRRAK RAQAASLLFG ATAAAAAANN NNKAQQPLES 180 AGIIDITGED ARRGRRLRLF GVDLELRAEP LLLDLQL
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 3e-41 | 44 | 150 | 4 | 115 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-41 | 44 | 150 | 4 | 115 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KJ726965 | 5e-81 | KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds. |