PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00142.1.g00020.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 373aa    MW: 39848.2 Da    PI: 6.5028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00142.1.g00020.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.8e-12104178155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkas....................kapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P+a+                    +    + + a+i+  A+e++k+L+
  Zpz_sc00142.1.g00020.1.am.mk 104 QRMTHIAVERNRRRQMNEYLAVLRSLMPEAYvqrvrsytpspyfpfyqtdtNHFRLRGDQASIVGGAIEFVKELE 178
                                   79***************************877**************99988888888999999999999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.90E-12102182No hitNo description
SuperFamilySSF474595.37E-15102199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-14102182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.986103177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9104178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-9109183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSALVDTLCA PSSDAALIYD TLNAASAANF LFDVNAAAAF CVDGGVALGA APVQQHAVSA  60
PGAGAAVAVA VAAPGDVDAT SSAPRRKRRR RARSCKSMEE AESQRMTHIA VERNRRRQMN  120
EYLAVLRSLM PEAYVQRVRS YTPSPYFPFY QTDTNHFRLR GDQASIVGGA IEFVKELEQQ  180
LQSLEAQKRT LVHQPTPFHS AAATPTTCAV AAVDSTTTTA TSNCSSSVTE DTCSDAPPFA  240
RFFVRPQYVW CHHSPRESTM TMLPVEDGGG RPGVADIEVS LVETHASVRV MAPRRPGQLL  300
GMVTGLQALR LTVLHLTVTT LDALALYSLS LKVEEECGLT TVDDIAAAVH HVLCIIDADA  360
ATQQMLALGA VGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18490RRKRRRR
28589RKRRR
38592RKRRRRAR
4104115RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00142.1.g00020.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575798e-78AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953510.11e-125transcription factor bHLH94
TrEMBLA0A0A9CH211e-130A0A0A9CH21_ARUDO; Uncharacterized protein
STRINGPavir.Ab02502.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-40bHLH family protein