PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00140.1.g00030.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 341aa MW: 37497.8 Da PI: 4.829 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 140 | 196 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK++k+s++prsYYrCt ++C++kk+ver+++dp+++ +tYeg H h Zpz_sc00140.1.g00030.1.am.mk 140 EDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERATDDPDTLLVTYEGLHLH 196 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.301 | 134 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 135 | 197 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.3E-29 | 135 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.0E-36 | 139 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 140 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MEELDALESS KRYWQQQDDL LGEEELMTMG GELLDERTPP PTVYSPAGYS NKHQVVVDEK 60 QEGPRRRRES MVNKLISTVY SGPTISDIES ALSFTGGGDG QQLAVKYNSS PVVFSPEKVL 120 NKMENKYTLK IKMCGSGLAE DGYKWRKYGQ KSIKNSPNPR SYYRCTNPRC NAKKQVERAT 180 DDPDTLLVTY EGLHLHYTYS HFLHGTQAQQ QQGLPKKPKK GPPNTSMLLS DHGEILDINS 240 TTPGGAGDAA VPDVPVIEEA AAAAASWGYF DGGAEEQQQQ HMEDDMASDG GLLEDVVPLL 300 VRRPCGSTTS STSNDNSPPS PVSWTTPTSP YIDMAILSNI F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 138 | 196 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 138 | 196 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00140.1.g00030.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198801.1 | 2e-98 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A3B6EVB4 | 1e-105 | A0A3B6EVB4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446P777 | 1e-105 | A0A446P777_TRITD; Uncharacterized protein | ||||
STRING | AC165171.2_FGP002 | 5e-95 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7525 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43290.1 | 2e-43 | WRKY DNA-binding protein 49 |