PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00124.1.g00600.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 448aa    MW: 48488.8 Da    PI: 7.0791
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00124.1.g00600.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-1764108147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +WT+eE++++++avk++G   W+ I +++g ++t+ q++s+ qk+
  Zpz_sc00124.1.g00600.1.sm.mk  64 REKWTEEEHDKFLEAVKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 108
                                   789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1158110IPR009057Homeodomain-like
SuperFamilySSF466891.2E-1559112IPR009057Homeodomain-like
PROSITE profilePS5129422.72259113IPR017930Myb domain
TIGRFAMsTIGR015573.0E-1662111IPR006447Myb domain, plants
SMARTSM007178.8E-1563111IPR001005SANT/Myb domain
PfamPF002492.4E-1564107IPR001005SANT/Myb domain
CDDcd001671.11E-1166109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MATVALVEVK ASPFAERDGV ESSSLRPPLD VAKPPVVDGV MQFKEGMDGY PVKVRKPYKI  60
TKQREKWTEE EHDKFLEAVK LYGRSWRQIQ EHIGTKTAVQ IRSHAQKFFS KVVREPGAGD  120
MIEIPPPRPK RKPLHPYPRK CANSSTRADP KLGPVSPSSG SYQENGSPVS VLSAVQSDAF  180
GSSVSNPSTG CTSSASSDGG NNGLVMLNGE EILPRNQAEM DLSPKEVKQD NSDGDLSEED  240
SSRKASLKLF GKTLIIPDPE KLCSLDGGPQ SSSKEMFEAA FIGGVATYAA ANEWLLQRRS  300
FPFCMGESRD ARIPLLHVWW PYYGFPVSHP RELGAVLNGE GAGESDTGKS PSAESSSDSM  360
GGVQTTMLTS CEVAKESLRA MQTPDSSALI FELKPGVNSA FVPVKPSCSG SQSTRGFVPY  420
KSEAEIGLCV IASFFQLKKL KYTGEANL
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00124.1.g00600.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0240492e-88FJ024049.1 Zea mays MYB-like protein E1 (MYBE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.10.0uncharacterized protein LOC101785788
TrEMBLA0A3L6S0P20.0A0A3L6S0P2_PANMI; Uncharacterized protein
STRINGSi006457m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-38MYB_related family protein