PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00120.1.g00010.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 27979.8 Da PI: 10.9639 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.4 | 7.7e-29 | 206 | 255 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ Zpz_sc00120.1.g00010.1.am.mk 206 PRLRWTPDLHHCFVHAIHKLGGQDKATPKRVLQLMGVGGLTISHVKSHLQ 255 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.966 | 202 | 257 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-27 | 202 | 255 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.17E-14 | 204 | 255 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-22 | 206 | 256 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.2E-9 | 207 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAGTHCVWHQ LFISRPCGFL FPARHADLRT RHSDRAYELL IGEQRPCGYH STAAAAAAVP 60 GVLTRRAARD EEGTPKVSAG RRREACAFPC SGRRAGWLAG WATGATSSQS GAQRYMCRAM 120 PGNDDEDGIG SEKTRIHTPG QSQAAHFQAD LRPALSSAPP ASVFLVAERH PVPKIGQSST 180 TMTMARTVVG RERNGGVRQY NRSKVPRLRW TPDLHHCFVH AIHKLGGQDK ATPKRVLQLM 240 GVGGLTISHV KSHLQVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 207 | 255 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00120.1.g00010.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956913 | 5e-75 | EU956913.1 Zea mays clone 1577371 mRNA sequence. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 7e-26 | G2-like family protein |