PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00117.1.g00320.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 327aa    MW: 35795.4 Da    PI: 9.3956
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00117.1.g00320.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.85.8e-3087198198
                                   EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70 
                                   f+kv tpsdv+k++rlv+pk++ae++            +++ ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk
  Zpz_sc00117.1.g00320.1.am.mk  87 FEKVVTPSDVGKLNRLVIPKQHAERYfpalgsaaseaASNEGKGLVLSFEDREGKAWRFRYSYWNSSQSYVMTKGWSRFVK 167
                                   99*******************************999988888999************************************ PP

                                   HHT--TT-EEEEEE-.SS..SEE..EEEEE- CS
                            B3  71 angLkegDfvvFkld.gr..sefelvvkvfr 98 
                                   +++L +gD+v F +  g+   ++++++ ++r
  Zpz_sc00117.1.g00320.1.am.mk 168 EKRLGAGDTVAFARGtGDaaARGRFFIDFCR 198
                                   ************9443332455666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-3883184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2984182IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-2785179No hitNo description
SMARTSM010198.4E-2287200IPR003340B3 DNA binding domain
PfamPF023628.9E-2887199IPR003340B3 DNA binding domain
PROSITE profilePS5086314.1787200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MLASVGTQLL NDRSQSRSCS HPPSVEEGEE IPIVKVNSYS TQLEQQLESR GVERVPMEFG  60
RIAAAQEDSE RARGGGGVAW LEREHMFEKV VTPSDVGKLN RLVIPKQHAE RYFPALGSAA  120
SEAASNEGKG LVLSFEDREG KAWRFRYSYW NSSQSYVMTK GWSRFVKEKR LGAGDTVAFA  180
RGTGDAAARG RFFIDFCRRR QDVAFLQPSA LQRLPLPSVP ISCPWPQEYG AYNPAAAPNR  240
HVLFLRPQMP SAVVLTSVPV RVAASAVEAT RSKRVRLFGV NLDSPPVMED NSRATGTVST  300
FLQLPSPSSS TSSSTAGKDL CSLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-53821993113B3 domain-containing transcription factor NGA1
5os9_B5e-53821993113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00117.1.g00320.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983810.11e-123putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN85e-93Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A1E5V5B21e-127A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRINGSi039972m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.12e-50B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]