PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00103.1.g00060.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 436aa MW: 46765.6 Da PI: 4.1627 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 62.4 | 9.9e-20 | 40 | 85 | 5 | 50 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtsea 50 ++lPian++r+mkk +Pa+++i+kdake +q+cv+efisf+tse Zpz_sc00103.1.g00060.1.sm.mk 40 GKYLPIANIARVMKKEVPARGQITKDAKEAMQHCVTEFISFITSEV 85 589*****************************************96 PP | |||||||
2 | NF-YB | 37 | 8.2e-12 | 106 | 149 | 51 | 94 |
NF-YB 51 sdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 s +++++krktingddl+ ++ +G+e+y+e l++yl+kyr+ + Zpz_sc00103.1.g00060.1.sm.mk 106 SYNVKEDKRKTINGDDLIRTMDMIGLEKYAELLRIYLTKYRKSD 149 5578999**********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.6E-29 | 40 | 161 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.79E-12 | 42 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-13 | 43 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-10 | 70 | 88 | No hit | No description |
PRINTS | PR00615 | 1.3E-10 | 109 | 127 | No hit | No description |
SuperFamily | SSF47113 | 5.09E-7 | 110 | 162 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 1.3E-10 | 128 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MGPRVGGGPR VLAGAGFPAM ADDSGKGNQE GVGESEDVRG KYLPIANIAR VMKKEVPARG 60 QITKDAKEAM QHCVTEFISF ITSEVCVVFN SAGIDSDSGG YAFRTSYNVK EDKRKTINGD 120 DLIRTMDMIG LEKYAELLRI YLTKYRKSDN KLTKGGDDSE EMGAINSHVG TKSSTNEPIL 180 LGDNQGMSYI EPQCDNMLST KGDDASVTMD ATNPYGGTSS STIQSDNMLS PKGGDDSIMM 240 DAIDLYGGTS SSPNQSDNML STKGGDGSIM MDAIDLYGGT SSSPNQSDNM LSTKGGDGSI 300 MMDAMDLYGG TSSSPNQVIP HGVYNQEMAL MEPQSMSTKS SNDSVMMDTV NLHSGISSTT 360 NQSDNILSIK GGDGSVMMDT INLYGDISSP TNQLIPHGVY NQGMANMEPR NQYFDEDVTQ 420 YFDEDVIDPQ HHDEDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-25 | 41 | 147 | 6 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-25 | 41 | 147 | 6 | 92 | Transcription factor HapC (Eurofung) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00103.1.g00060.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP45106 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.7 | 4e-31 | nuclear factor Y, subunit B1 |