 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zpz_sc00091.1.g00660.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
TCP |
| Protein Properties |
Length: 188aa MW: 19707.2 Da PI: 10.6024 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zpz_sc00091.1.g00660.1.sm.mk | genome | ZGD | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 110.4 | 2.5e-34 | 38 | 130 | 8 | 89 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssasnsss 87
++++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c+++ s s+as s
Zpz_sc00091.1.g00660.1.sm.mk 38 SKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCSSAPSTSAAS---S 115
79********************************************************8888844442222222222...1 PP
TCP 88 g.............k 89
+
Zpz_sc00091.1.g00660.1.sm.mk 116 FllgkrprqdvvvaH 130
122223333333330 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MASRDDATAT FHVYGALPAA ASTDAVTPAA KKPPSAGSKD RHSKVNGRGR RVRMPIVCAA 60
RVFQLTRELG LKSDGQTIEW LLRQAEPSIL AATGSGTTPA VFSCSSAPST SAASSFLLGK 120
RPRQDVVVAH EAAASPQPPF WAALQARPVA WGLSPAQEQQ AYASVAQGHH LNLLSVLSSA 180
TRPAEESR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK064708 | 5e-96 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. |
| GenBank | AL663019 | 5e-96 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. |
| GenBank | AP014960 | 5e-96 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
