PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00087.1.g00200.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 664aa    MW: 73409.2 Da    PI: 7.2375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00087.1.g00200.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.8e-061001111526
                                     -TTTTT-SS-SS CS
                         zf-CCCH  15 CkyGdrCkFaHg 26 
                                     CkyG++C+F+H+
  Zpz_sc00087.1.g00200.1.sm.mkhc 100 CKYGASCRFSHD 111
                                     ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.38582113IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.113126151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.705.0E-74329572IPR013785Aldolase-type TIM barrel
CDDcd028011.23E-94333565No hitNo description
SuperFamilySSF513953.52E-62333622No hitNo description
PfamPF012071.1E-52336570IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360417435IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAATAPATDP PDSSPAVASA SSPSHPTPEE LVARAVAPVK PAFLRPPPVR DAPKEEGKAS  60
GGVTAEKKSK RQLRRERQQE KKSTSHLCIE VGKSENVDSC KYGASCRFSH DINAYLAQKP  120
ADLEGTCPFT ASGMLCPYGL TCRYLGTHKD NLPSENCPEG DREINSLNKD TQKLLWKNKY  180
DFPKASTQIK LLGLKDIKKN KVNAASDELK ADNDYPDKSC EQKGNGNCEF PCSISASVKP  240
ESALCKETDN SGGEALVANS VPCDEPRPLK KSKVEADETQ IQGAGIHDKE AESENHKLNY  300
GFEVPSDNQN SCRIDLITTP HLREKKIIDF RGKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCSNLL QGQASEWALL RRHSSEDLFG VQICGPYPDT IARTVELVDN ECSVDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIIKA ASTVTEKLIT VKVRTAFFEG RNRADSIVSD  480
IYDWGASALT IHGRSRQQRY SKLADWDYIY QCAQKAPDNL HVIGNGDVFS FTDWNKHLSD  540
CSKISSCMIA RGALIKPWIF TEIKEQKHWD ITSGERLNIL KDFVRFGLEH WGSDSKVGLL  600
DVIPQRLNWR PPSYYGRDDL ETLMVSDSAA DWIRISEMLL GKVPEGFTFA PKHKSNAYDR  660
AENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A1e-2833057727266tRNA-dihydrouridine synthase B
6ei9_B1e-2833057727266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00087.1.g00200.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992640.0KM399264.1 Sorghum bicolor FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824565.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A3L6QB050.0A0A3L6QB05_PANMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGSi009538m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]