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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00083.1.g00130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 422aa MW: 45353.2 Da PI: 9.7174 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 278 | 300 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+++ L H+++H Zpz_sc00083.1.g00130.1.am.mk 278 HRCSVCGKVFPSHQALGGHMSSH 300 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.263 | 278 | 305 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.9E-9 | 278 | 300 | No hit | No description |
SMART | SM00355 | 9.2E-4 | 278 | 300 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.5E-11 | 278 | 302 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 280 | 300 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.9E-9 | 342 | 369 | No hit | No description |
Pfam | PF13912 | 4.2E-13 | 346 | 370 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 347 | 369 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 347 | 369 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 349 | 369 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MATAAASVHV RVADALLYPE GERARGTGAG AGSHRHACAS SDAYALHLRR AGATRALKAG 60 GEWTAEPAVM RKSSHSRPVQ SGSQMEWNYG TLPSRRAAQC YTYGITRPAA QTRRFAPRGG 120 SPCTIAAGQR PIALMRQSLR RFHPGADSRP SSRPALHWHN LRSQPSSHPH PLDTPVIFSQ 180 ISRTRPAPFG SGSCTSHRST AMAVDTVLDA PAGLQRRLSC RDLEYEGDQV QAWAKRKRSS 240 RRHPRAPTEE EHLALCLLML GRDHRDCEDQ DPAPATEHRC SVCGKVFPSH QALGGHMSSH 300 RSRPTPAAAA TATTITTVVE DPVVATAASS ASTPATSCST SGTGRVHECS VCKKTFPTGQ 360 ALGGHKRCHY LGAIVTPERG FDLNIPALPD ISEWCVPVTV AEEEDVGLSP LAFKKPRFMI 420 PA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00083.1.g00130.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562286.1 | 6e-54 | zinc finger protein 1 | ||||
Refseq | XP_020173392.1 | 6e-54 | zinc finger protein 1-like | ||||
TrEMBL | A0A0A9AQT5 | 4e-58 | A0A0A9AQT5_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G14750.1 | 2e-53 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 4e-34 | salt tolerance zinc finger |