PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00080.1.g00460.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 686aa MW: 73399.5 Da PI: 6.2712 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.9 | 1.1e-10 | 65 | 108 | 2 | 45 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVk 45 ++ +++ +q+++Le+ F+++ +p++e+r+ LA k+g++ +qVk Zpz_sc00080.1.g00460.1.am.mk 65 STYKRHSMQQIQALEASFNRCAHPDEEMRKALAVKIGMEPTQVK 108 56778999***********************************8 PP | |||||||
2 | START | 78.9 | 1.3e-25 | 232 | 446 | 3 | 203 |
HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWde 74 ae+a +e++++a+a+ p+W + e +n e+ + + + + a r++gvv +++ +lv l d + +W++ Zpz_sc00080.1.g00460.1.am.mk 232 AERAVREFLALAAAGVPMWLPTAgngEVLNFGEYAARMFPRLLgpcpqgFVSVATRETGVVWAAPGDLVGVLTDAG-RWSQ 311 68899999999999999999999888666666665555443336888888999***********************.**** PP T-S...EEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EES CS START 75 tla...kaetlevissggalqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaell 148 +++ +a t + s g l q+ sp vp + f+R+++ +++ +w++vdvS+d + + + R++l Zpz_sc00080.1.g00460.1.am.mk 312 MFPgivAAVTARDVGSSGMLGPPDGLIQL-SPRVPnHSVKFLRFTKMmENGRQWAVVDVSIDAILAVGQegGVEHTRCGLM 391 ***98766666677777888888888888.9*99*9999********99999**********99998865667778***** PP SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 pSg+lie++++g skvtw+ h+++++ +++ l+r+++ sg+a ga +w+atl+r Zpz_sc00080.1.g00460.1.am.mk 392 PSGCLIEEMDGGCSKVTWIVHAEYDETSVPPLFRPFLPSGQALGACRWLATLKRK 446 ****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-11 | 48 | 108 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-9 | 48 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.005 | 63 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.60E-9 | 64 | 108 | No hit | No description |
Pfam | PF00046 | 5.1E-8 | 66 | 108 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 24.677 | 221 | 452 | IPR002913 | START domain |
CDD | cd08875 | 7.25E-74 | 226 | 445 | No hit | No description |
SuperFamily | SSF55961 | 1.1E-15 | 229 | 445 | No hit | No description |
SMART | SM00234 | 1.2E-5 | 230 | 449 | IPR002913 | START domain |
Pfam | PF01852 | 3.1E-19 | 232 | 446 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MENEGAHHTS NVDDASLTTG TDDASEQIWD SEEFDIDALL EDEDASASTD NDAQQSDAQG 60 SKVRSTYKRH SMQQIQALEA SFNRCAHPDE EMRKALAVKI GMEPTQVKHC VHHLCLNSSF 120 ATASDWSAHQ YAQVKLLSQA NNQLHGQNAF LKAENVALRK RVLQRSCFAC VCLMAPPELL 180 TGKQRLIVEN ARLKEAYQRA QTRLKELSRG APLPLAAPSI AQDHAALLLH HAERAVREFL 240 ALAAAGVPMW LPTAGNGEVL NFGEYAARMF PRLLGPCPQG FVSVATRETG VVWAAPGDLV 300 GVLTDAGRWS QMFPGIVAAV TARDVGSSGM LGPPDGLIQL SPRVPNHSVK FLRFTKMMEN 360 GRQWAVVDVS IDAILAVGQE GGVEHTRCGL MPSGCLIEEM DGGCSKVTWI VHAEYDETSV 420 PPLFRPFLPS GQALGACRWL ATLKRKYEFM GILKNSFPAA GDGNKVVMEM ARRMTASFYA 480 AISGPATLPG STVREWRGGS GTGGDERFQA SVRMVIWTCV GGVPGRPASV QVLSATTTVW 540 LPGTEPRLVL DYLCDERRRD EWDVLAAGGA VNVTGPIEET TVLAIANGGD PASGFLLPSG 600 FAILPDGHRK ASRAPAAAAS SSSGAPPPWH RTTTGCLLTA AYQTLLPAEP PTANLPAGAF 660 DVVGKQLCLA IDKVKVAVEA DVVVAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00080.1.g00460.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8324 | 17 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-85 | protodermal factor 2 |