PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00079.1.g00190.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 144aa    MW: 15635.6 Da    PI: 8.6451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00079.1.g00190.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000113254123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C +C++ F ++  L  H++ H
  Zpz_sc00079.1.g00190.1.sm.mk 32 FVCMYCDRKFYSSQALGGHQNAH 54
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.73E-82678No hitNo description
PROSITE profilePS5015710.8033259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MECEGNSVMK QELNLELTLL HRSASPEPPG FFVCMYCDRK FYSSQALGGH QNAHKYERSL  60
AKRRREVAAA MRAHGAAASG TSRDAAARSG GASAAVAADK RARMDDQLQD AATVCALELG  120
NKKRSSEHGY GVHRADELDL SLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00079.1.g00190.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632822e-58EU963282.1 Zea mays clone 260368 hypothetical protein mRNA, complete cds.
GenBankEU9724022e-58EU972402.1 Zea mays clone 380740 zinc finger protein 3 mRNA, complete cds.
GenBankEU9731302e-58EU973130.1 Zea mays clone 393764 zinc finger protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956890.13e-50uncharacterized protein LOC101776967
SwissprotQ392614e-14ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A0A9HWN61e-60A0A0A9HWN6_ARUDO; Uncharacterized protein
STRINGPavir.J15401.1.p3e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-15zinc finger protein 2