PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00077.1.g00330.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 107aa MW: 11483.6 Da PI: 5.1038 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.7 | 7.3e-14 | 69 | 106 | 1 | 38 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm 38 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+++ Zpz_sc00077.1.g00330.1.sm.mk 69 RWPRQETLALLKIRSEMDAAFREAALKGPLWEEVSRYV 106 8**********************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MQQQQQQQQP GMPPFSPTAG AGTTTAQPSP ISSRPPEGHP EPGAGGSAPR AEDSFDHEGD 60 RSGSSVGSRW PRQETLALLK IRSEMDAAFR EAALKGPLWE EVSRYVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269|PubMed:19717615, ECO:0000269|PubMed:21169508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00077.1.g00330.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by water stress. {ECO:0000269|PubMed:21169508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC121490 | 3e-37 | AC121490.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0005F16, complete sequence. | |||
GenBank | AC134237 | 3e-37 | AC134237.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0090O10, complete sequence. | |||
GenBank | AC210446 | 3e-37 | AC210446.1 Oryza glaberrima clone OG_BBa0010J07, complete sequence. | |||
GenBank | AC216760 | 3e-37 | AC216760.1 Oryza minuta clone OM__Ba0212D22, complete sequence. | |||
GenBank | AC232902 | 3e-37 | AC232902.1 Oryza officinalis clone OO__Ba0128B10, complete sequence. | |||
GenBank | AP014959 | 3e-37 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 3e-37 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986012.1 | 1e-26 | trihelix transcription factor GTL1 isoform X1 | ||||
Refseq | XP_004986013.1 | 1e-26 | trihelix transcription factor GTL1 isoform X2 | ||||
Refseq | XP_015689742.1 | 6e-29 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Swissprot | Q9C882 | 9e-15 | GTL1_ARATH; Trihelix transcription factor GTL1 | ||||
TrEMBL | J3LJ74 | 2e-26 | J3LJ74_ORYBR; Uncharacterized protein | ||||
STRING | OB03G11000.1 | 3e-27 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15223 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 2e-16 | Trihelix family protein |
Publications ? help Back to Top | |||
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