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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00060.1.g00790.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 433aa MW: 46078.7 Da PI: 8.0744 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.4 | 8.8e-40 | 99 | 159 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k++s Zpz_sc00060.1.g00790.1.sm.mkhc 99 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSAS 159 7899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-27 | 95 | 148 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.8E-32 | 101 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.929 | 103 | 157 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 105 | 141 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAECRAGGGG GGDGLIKLFG KTIPVPEAAT AVGDADRDLQ RSGSNTTEPK GHETTLPDST 60 GSPSQQGVTD TEESSAENNS LADQQQGDPT KQKEKLKKPD KILPCPRCNS MDTKFCYYNN 120 YNINQPRHFC KNCQRYWTAG GAMRNVPVGA GRRKSKSASA ASHFLQRVRA ALPVDPLCIS 180 AKINGTVLSF GSDTSSLDLT EQKKHLKEKL VPVTRIKNVD DQSIGSCAGE GSPKGGEPKL 240 INQKEQVVTA DKSASVVQHP CMNGVTMWPF SCAPPPACYT SGIPILFYPA AAAYWGCMVP 300 GAWNSPWLSH FQSEYATSPS SASPASIKSN CFTSGKRPRD GDEEGNAPGN GKVWVPKTIR 360 IDDADEVARS SILSLIGING DKVGKDGKGC KLSSIFEPKD EAETATHAII NGLPFLQGNP 420 AALSRSLTFQ EGS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00060.1.g00790.1.sm.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985552.1 | 0.0 | cyclic dof factor 1 | ||||
TrEMBL | C7EAG3 | 0.0 | C7EAG3_ELECO; Dof-type zinc finger protein | ||||
STRING | Pavir.Ia04317.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-50 | cycling DOF factor 2 |