PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 177aa MW: 19217.8 Da PI: 9.0357

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00058.1.g00280.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.5	3.7e-23	109	160	1	52
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCsr + + Zpz_sc00058.1.g00280.1.sm.mk 109 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVTAGGKQQRFCQQCSRSYPM 160 6***********************************************7765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-24	102	158	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.503	107	177	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-23	108	168	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.8E-18	110	160	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MSGRLNAVTS VAGNDFAFAP SMQQPPYLGF DHGVEGGGGS GIGQRAMQNH LYESLDFAAA 60 AAMQIGLNLG RRTYFSPGDM LAVDRLLMRS RLGGVFGLGF GGAHHQPPRC QAEGCKADLS 120 GAKHYHRRHK VCEYHAKASV VTAGGKQQRF CQQCSRSYPM QGRQQCQYVL AFDMDMV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	6e-16	110	161	6	57	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00058.1.g00280.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ011617	6e-83	AJ011617.1 Zea mays mRNA for SBP-domain protein 4.
GenBank	BT033937	6e-83	BT033937.1 Zea mays full-length cDNA clone ZM_BFc0033O21 mRNA, complete cds.
GenBank	BT034298	6e-83	BT034298.1 Zea mays full-length cDNA clone ZM_BFc0007A11 mRNA, complete cds.
GenBank	BT065712	6e-83	BT065712.1 Zea mays full-length cDNA clone ZM_BFc0041B17 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965676.1	1e-51	squamosa promoter-binding-like protein 10
Swissprot	A2YFT9	4e-49	SPL10_ORYSI; Squamosa promoter-binding-like protein 10
Swissprot	Q0DAE8	4e-49	SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBL	A0A453T2V7	2e-50	A0A453T2V7_AEGTS; Uncharacterized protein
TrEMBL	K3XXA1	3e-50	K3XXA1_SETIT; Uncharacterized protein
STRING	Pavir.Da00293.1.p	8e-58	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2375	35	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	2e-33	squamosa promoter binding protein-like 8