PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00057.1.g00540.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 433aa MW: 46511.7 Da PI: 5.8711 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 201 | 259 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+ Zpz_sc00057.1.g00540.1.am.mk 201 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 259 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 32.742 | 195 | 261 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.6E-31 | 195 | 261 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-26 | 198 | 261 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-37 | 200 | 260 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 202 | 259 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MCDFFWPSLA DEGDLADVVR ASLQQLPAAA TPASATELVS ADAHGHLPAE EVERFLPTHG 60 VSCRGNHDHG DEVHLQPQWQ LVHGNGMGVT VGSSGGGGSC DPLLLHSSPS YPLLEPQQTE 120 GLIRHVMSGP TPQLLGVGEG DCDVAALEMD EQGLDMAMDP HAPAIKRRKS QTKKVVCIPA 180 PTAAPPGVGG RPSTSGEVVP SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER 240 SRTDPSMLVI TYTSDHNHPW PTQRNVLAGS TRPAAAAKSQ HSTAATVPPP PTRHHHTIGT 300 VGDSATSSST GDNNVHQQQV PKQEVLDVMD HPMPEQGAAA VHDLDMFAET DGALNIMQTF 360 NFNPQKQQQQ QQLATAADGD DDDLLQDDKQ QLLDPFSFNF FDWRRAEGVY CRQAMVQANK 420 ADGIPGITGG GRV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 8e-24 | 169 | 262 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 8e-24 | 169 | 262 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00057.1.g00540.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC018727 | 2e-72 | AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 2e-72 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 2e-72 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. | |||
GenBank | KC954610 | 2e-72 | KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008658838.1 | 1e-108 | probable WRKY transcription factor 35 | ||||
TrEMBL | A0A1E5W3V0 | 1e-108 | A0A1E5W3V0_9POAL; Putative WRKY transcription factor 35 | ||||
STRING | GRMZM2G383594_P01 | 1e-107 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11847 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34830.1 | 7e-54 | WRKY DNA-binding protein 35 |