PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00053.1.g00200.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 237aa MW: 25271.8 Da PI: 7.6077 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 39.8 | 1e-12 | 38 | 62 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt +LHerFv+av+qLGG+e Zpz_sc00053.1.g00200.1.sm.mk 38 KPRLRWTADLHERFVDAVAQLGGPE 62 79*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 35 | 63 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-7 | 38 | 63 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 5.1E-20 | 110 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MFPPGLIHHR PDGPAPGDAP PRSGPGGGPS LVLTADPKPR LRWTADLHER FVDAVAQLGG 60 PESERLPLHP SNARSLAGAS IGLLVGLPRV DSCPARPIVA SLLLERGSQE VKEALRAQME 120 VQRRLHEQVE VQKRVQIRMD ALQKYIDGIL ENACKLVTEQ FASSSFSISD PADLPELSPG 180 GGGVMCGPND TMRSSVFNQL AVSSMDSHSP GGKPSPSGIE GPPLLLQKSP ELRRRSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00053.1.g00200.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961925 | 6e-53 | EU961925.1 Zea mays clone 239069 myb family transcription factor-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956514.1 | 1e-106 | protein PHR1-LIKE 2 isoform X1 | ||||
Swissprot | Q8LAJ7 | 3e-31 | PHL3_ARATH; Protein PHR1-LIKE 3 | ||||
TrEMBL | A0A368Q049 | 1e-104 | A0A368Q049_SETIT; Uncharacterized protein | ||||
STRING | Si030441m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 8e-33 | G2-like family protein |
Publications ? help Back to Top | |||
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