PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00053.1.g00180.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family G2-like
Protein Properties Length: 311aa    MW: 34046.5 Da    PI: 6.7086
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00053.1.g00180.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.21.8e-3346100155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     ++rlrWt++LHerFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Zpz_sc00053.1.g00180.1.am.mkhc  46 RQRLRWTNDLHERFVEAVTQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100
                                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.47843103IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-3245101IPR009057Homeodomain-like
SuperFamilySSF466891.0E-1745100IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-2547101IPR006447Myb domain, plants
PfamPF002491.1E-84899IPR001005SANT/Myb domain
PfamPF143793.6E-23133178IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHSTKPEASF GQAHTDSVIN QQQMVLAGND MGPSNGANSN TNMAARQRLR WTNDLHERFV  60
EAVTQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYIPDSATD GNKVDNKDPG  120
DLLAGLEGSS GLQISEALKL QMEVQKRLHE QLEVQRQLQL RIEAQGKYLE KIIEEQQRFS  180
GVKPEMPLAG ASVTVSSNEQ FPDSERTEPS TPAPKSESPT QGASNRDNGG RTEAPKSPCH  240
DDSLSHHEPL TPDSNHQPGS PTASPNHERA AKRQRARSTE FSQGDCSLTG HIFESSSGSE  300
FQQYSMSYSG H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-2346103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-2346103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-2346103158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-2346103158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00053.1.g00180.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152613.11e-180MYB-CC type transfactor
RefseqXP_023156307.11e-180MYB-CC type transfactor isoform X1
SwissprotQ9SJW03e-98PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3L6DZW51e-178A0A3L6DZW5_MAIZE; Myb family transcription factor PHL7
TrEMBLB4F7W71e-178B4F7W7_MAIZE; MYB-CC type transfactor
TrEMBLK4JRK41e-178K4JRK4_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G173943_P021e-179(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-85G2-like family protein