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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00045.1.g00570.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 223aa MW: 25055.5 Da PI: 9.5838 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.1 | 4.9e-23 | 91 | 187 | 1 | 84 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +Wt ++v++L+ a+++++e+++++ +kk++W+ vs +m ergf +sp+qC++k+++lnkryk+++e+ + Zpz_sc00045.1.g00570.1.am.mk 91 KWTSDMVKLLVSAVSYVDEEVEADHgsgsgrrkhavlKKKGKWKPVSMAMTERGFAVSPQQCEDKFNDLNKRYKRLTEILG 171 7*********************876667788899999*******************************************9 PP trihelix 70 kr.tsessstcpyfdq 84 ++ +++ +++ +++++ Zpz_sc00045.1.g00570.1.am.mk 172 RGrACKIVEKPALLEK 187 9956887777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.8E-21 | 89 | 214 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MEGNVPPRAL IPGSPFDLEP AMQQPRRQQF HFAQPQVHQG AFAVPEPNPA QELRSVVKTS 60 LSDEEDAYDG LHDNGKTAAA AAAASQWHRV KWTSDMVKLL VSAVSYVDEE VEADHGSGSG 120 RRKHAVLKKK GKWKPVSMAM TERGFAVSPQ QCEDKFNDLN KRYKRLTEIL GRGRACKIVE 180 KPALLEKISL SARLKEEAKK HLNSKHLHYE EMCSYHNRNL LPP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00045.1.g00570.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018913 | 1e-126 | BT018913.1 Zea mays clone EL01T0403G05.d mRNA sequence. | |||
GenBank | BT063374 | 1e-126 | BT063374.1 Zea mays full-length cDNA clone ZM_BFc0058B03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004952693.1 | 1e-111 | uncharacterized protein LOC101766818 | ||||
Refseq | XP_004952694.1 | 1e-111 | uncharacterized protein LOC101766818 | ||||
TrEMBL | A0A1E5VNL4 | 1e-111 | A0A1E5VNL4_9POAL; Uncharacterized protein | ||||
TrEMBL | K3YT02 | 1e-110 | K3YT02_SETIT; Uncharacterized protein | ||||
STRING | Si017397m | 1e-110 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 2e-53 | sequence-specific DNA binding transcription factors |