PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00042.1.g00220.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 272aa MW: 28030.5 Da PI: 8.6887

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00042.1.g00220.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	99.8	1.7e-31	78	131	6	59
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + prC s++t+fCyy ny++s Pr+fC+aCrryWt GG+lrnvP+Gg++rk Zpz_sc00042.1.g00220.1.am.mk 78 EQSPRCASHDTRFCYYKNYNTSHPRHFCRACRRYWTLGGSLRNVPIGGSTRKCP 131 578************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	25.033	78	132	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-26	78	130	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-20	79	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MMEAPLHQRS SSLSLGPQLQ ANYKSDHHLA IATSVAAKMA VSGCGSAATT AAETAYLQQL 60 HQTTAVTEAN GNNGARGEQS PRCASHDTRF CYYKNYNTSH PRHFCRACRR YWTLGGSLRN 120 VPIGGSTRKC PRLAHPTSAP PASRRHVVFG GGSAAAPPTG LLGSLFALGG AAPVREGRSG 180 SGFELGRGLP MPSGAGGAFG GDGEICAQMQ GLGVRDGLGG ASELLWPAGL LDNGIADEWK 240 VPSVSEATWP EFSAAVAPPQ AGGLLHGGAQ LM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00042.1.g00220.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582406	2e-68	KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008644658.1	6e-61	dof zinc finger protein DOF3.4
TrEMBL	A0A1D6GLQ1	1e-59	A0A1D6GLQ1_MAIZE; Dof zinc finger protein DOF1.6
STRING	GRMZM2G061292_P01	2e-60	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	4e-25	DOF zinc finger protein 1