PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00039.1.g00500.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 243aa    MW: 26392.4 Da    PI: 7.3624
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00039.1.g00500.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.7e-107298127
                                  --S---SGGGGTS--TTTTT-SS-SSS CS
                       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                  ykt+lC +f  +G+C y + C+FaHg+
  Zpz_sc00039.1.g00500.1.am.mk 72 YKTRLCERFESGGWCAYEEACTFAHGR 98
                                  9************************96 PP
2zf-CCCH23.97.5e-08143161826
                                   GGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                                    f+  GtC+yGd+C++aHg
  Zpz_sc00039.1.g00500.1.am.mk 143 EFRDKGTCRYGDKCNYAHG 161
                                   57778*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-1566104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-970102IPR000571Zinc finger, CCCH-type
SMARTSM003560.00677198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7427199IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-87298IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7139162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704140163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5141161IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENESNATAS GNAGHNSSWE GSSVIVLPAE SAAARPKSQQ QCGATRPQQR EKEQQQQPGA  60
ELVPEPPAKV FYKTRLCERF ESGGWCAYEE ACTFAHGRAE LRPPLPLPPT FRRSRPAPPP  120
PADADDSWRA TFLYVGAGKV CFEFRDKGTC RYGDKCNYAH GTAAVQPTDT VYHTGPDPAR  180
KSATSPARAF SPGSCIYAPA TTRAFPPAHD VVDGPQGEVK PTPLELLSRK KLSGIYGDWP  240
EDF
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00039.1.g00500.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819424.15e-41zinc finger CCCH domain-containing protein 1-like
TrEMBLA0A1E5VJ662e-45A0A1E5VJ66_9POAL; Uncharacterized protein
STRINGPavir.Ea00381.1.p1e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-07C3H family protein