PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00039.1.g00270.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 487aa MW: 51434.3 Da PI: 5.9492 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 266 | 321 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++ LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Zpz_sc00039.1.g00270.1.am.mk 266 KARRCWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 321 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.69 | 263 | 323 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.36E-17 | 263 | 324 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 264 | 324 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-26 | 266 | 321 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-6 | 268 | 319 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MSSSSPSDLT LDYKPNGGAY AAIPKQQQAP PLVDGHHLTT EPASQKLREF LARLEEERLK 60 IDAFKRELPL CMQLLNHAME AYKQQLEAYQ MGSQQAVATR PLVLEEFIPL KNIGIDAVTD 120 KPGNPPSEKA TWMESAQLWN GPAADTAAKG PQTPKERSEH PLPIDTLGTL DGRRSGGGGG 180 GAFLPFAKDK SAVPDAATAL PELALAPAEK DAVAEVDRKP PYLDAAGGGN NGVLGALRDT 240 QNGGVKPTSA APEGQASPAP PQTHRKARRC WSPELHRRFV NALQILGGAQ VATPKQIREL 300 MKVDGLTNDE VKSHLQKYRL HTRRPPAPPN PATAAPQLVV LGGIWVPPEY AAQGAAPAIY 360 GAHPATQPHY TAAVAAQEYY PSHAAVHHLQ HHPATAMVHR AAAAPPPPHA YKVAMAGSPP 420 QSEGRSSAGG GSVGAGGGGS GRERSESIEE EGEDQEREDD DDDEEEEMNA AKADAGDEAA 480 GAGAVKY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-14 | 266 | 319 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-14 | 266 | 319 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00039.1.g00270.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819732.1 | 0.0 | transcription factor NIGTH1 | ||||
Swissprot | Q5VRW2 | 1e-142 | NOH1_ORYSJ; Transcription factor NIGTH1 | ||||
TrEMBL | A0A1E5VUK6 | 0.0 | A0A1E5VUK6_9POAL; Myb family transcription factor EFM | ||||
STRING | Sb03g004090.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9773 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 7e-68 | G2-like family protein |
Publications ? help Back to Top | |||
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