PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00033.1.g00790.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 152aa MW: 16816 Da PI: 8.7386 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.9 | 1.1e-28 | 52 | 146 | 1 | 94 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekew.yfFskrdkkyatgkrknratk 79 lppGfrF+P deel+++yL++k+++ + +++evd+yk+ePwdL p++ +++++ + yfF+ r+ k a+g r+nrat Zpz_sc00033.1.g00790.1.sm.mk 52 LPPGFRFRPMDEELLTHYLTRKAANVGFAS-AAVREVDLYKAEPWDLlPAAGAGDDDGCrYFFCARRVKFASGLRTNRATP 131 79*************************988.78*************95554444555556********************* PP NAM 80 sgyWkatgkdkevls 94 +gyWk+tgkdk ++ Zpz_sc00033.1.g00790.1.sm.mk 132 AGYWKSTGKDKVWYE 146 **********98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-31 | 48 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.768 | 52 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-15 | 53 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MERAQGSQSL AQQACAFAAT RDGQLPANTN TQMRVPCIGT GNHPRDRPCT GLPPGFRFRP 60 MDEELLTHYL TRKAANVGFA SAAVREVDLY KAEPWDLLPA AGAGDDDGCR YFFCARRVKF 120 ASGLRTNRAT PAGYWKSTGK DKVWYEEDAR VL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-24 | 52 | 151 | 17 | 114 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-24 | 52 | 151 | 17 | 114 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-24 | 52 | 151 | 17 | 114 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-24 | 52 | 151 | 17 | 114 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swm_B | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swm_C | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swm_D | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swp_A | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swp_B | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swp_C | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
3swp_D | 3e-24 | 52 | 151 | 20 | 117 | NAC domain-containing protein 19 |
4dul_A | 2e-24 | 52 | 151 | 17 | 114 | NAC domain-containing protein 19 |
4dul_B | 2e-24 | 52 | 151 | 17 | 114 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00033.1.g00790.1.sm.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462370.1 | 8e-38 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FLR3 | 4e-33 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | C5XC89 | 2e-36 | C5XC89_SORBI; Uncharacterized protein | ||||
STRING | Sb02g024530.1 | 3e-37 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23139 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 2e-33 | NAC domain containing protein 80 |
Publications ? help Back to Top | |||
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