PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00031.1.g00940.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 378aa MW: 39395.7 Da PI: 9.399

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00031.1.g00940.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	90	150	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e alkcprCds ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+ss Zpz_sc00031.1.g00940.1.sm.mk 90 PEPALKCPRCDSINTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRSS 150 67899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	74	148	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.6E-33	93	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MVFPSVPAYL DPPNWNNQAY VSVQQQGQQP RASGGGDAPL LPVDPAAATA TPPEATGLPS 60 SSTAASASVA TQARPNSMAE RARLARMPQP EPALKCPRCD SINTKFCYYN NYSLSQPRHF 120 CKTCRRYWTR GGSLRNVPVG GGCRRNKRSS KSSSSGASSS SSKPSSSARQ LPSGPSSTPS 180 TPGGITGGII PPGLGSLSHQ YLPFLGSMHQ PGGNLGLTFS AGLPPHGMQH VDAVDQFPVA 240 SGGASLDQWR VHQQQPQQQF PFLAGGVLDL QPRPQMYQLG LEANRGSGGS AASAFTLGQA 300 SGTTAREGPM KLDLDDSKGQ EMSLQRQYMA ALRHGEDIWD GNTGGSAGDG RGNDGAGWPM 360 NVPGFRSSST GGDGSGLL

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MVFPSVPAYL DPPNWNNQAY VSVQQQGQQP RASGGGDAPL LPVDPAAATA TPPEATGLPS  60
SSTAASASVA TQARPNSMAE RARLARMPQP EPALKCPRCD SINTKFCYYN NYSLSQPRHF  120
CKTCRRYWTR GGSLRNVPVG GGCRRNKRSS KSSSSGASSS SSKPSSSARQ LPSGPSSTPS  180
TPGGITGGII PPGLGSLSHQ YLPFLGSMHQ PGGNLGLTFS AGLPPHGMQH VDAVDQFPVA  240
SGGASLDQWR VHQQQPQQQF PFLAGGVLDL QPRPQMYQLG LEANRGSGGS AASAFTLGQA  300
SGTTAREGPM KLDLDDSKGQ EMSLQRQYMA ALRHGEDIWD GNTGGSAGDG RGNDGAGWPM  360
NVPGFRSSST GGDGSGLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00031.1.g00940.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791451.1	1e-148	dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2S3IRW0	1e-147	A0A2S3IRW0_9POAL; Uncharacterized protein
STRING	Pavir.J14669.1.p	1e-145	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12301	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	3e-41	Dof family protein