PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00022.1.g00320.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 635aa MW: 67085.5 Da PI: 9.0773

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00022.1.g00320.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.6	1.2e-37	406	463	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +l+cprCdstntkfCy+nnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+n k+s Zpz_sc00022.1.g00320.1.am.mk 406 TLRCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNTKRS 463 679***************************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-26	398	455	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	407	461	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-31	407	461	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	409	445	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MDAYLTLLSL ASKHATVALS RDGGLPFLAE FAPAAARCAS AKADLPALRR PGTPRQASRP 60 APCRCPVAIF DRNLAGTWGA FAFDLAGAAL CFGSLICGNS VGLPRRTVAE EEEASARKRD 120 ALLLTLKPLM LSCRFGDSSA GTHSLLPVRP RQAVVAPSRR PLSFDPSAVT YVDERASSRR 180 REMAPRVGGT MPHLAFALFR LCDVYKYGAA GERGPSPSLD SSSPRLHPSR SPVTSIRRCE 240 LEPSGAIALA LVGAVHRTPP PLATLSSAPF LPLTLFACLS CLSLAALFLD KSYRVRAKES 300 CGEFVSSFSF YLDLALLVSS SSSGTCSCLF TASVAMVFSS LPIFLDPPSW GQMQVQQQQQ 360 QPLHCLLGGG SDHQHLMPPP SGLAPAXXXX XXXXXXXRVP LPEPGTLRCP RCDSTNTKFC 420 YFNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRSSKKSSRQ GGVAAAGGAA 480 AASSSSSTTS TSTTPTTTTT SSAAAAEVLA SMQAQLPQFG LPPAAAAAAL EASLEGYQYH 540 HYLPLQMQQQ FLQQGLQGYH FADGDSGGVF ADGFPRGVAS GLLAQLAAVK MEEHNNGGAV 600 AAHEQSYWPS SGGGGNGWPT EFLPGFSSSS SGNVV

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MDAYLTLLSL ASKHATVALS RDGGLPFLAE FAPAAARCAS AKADLPALRR PGTPRQASRP  60
APCRCPVAIF DRNLAGTWGA FAFDLAGAAL CFGSLICGNS VGLPRRTVAE EEEASARKRD  120
ALLLTLKPLM LSCRFGDSSA GTHSLLPVRP RQAVVAPSRR PLSFDPSAVT YVDERASSRR  180
REMAPRVGGT MPHLAFALFR LCDVYKYGAA GERGPSPSLD SSSPRLHPSR SPVTSIRRCE  240
LEPSGAIALA LVGAVHRTPP PLATLSSAPF LPLTLFACLS CLSLAALFLD KSYRVRAKES  300
CGEFVSSFSF YLDLALLVSS SSSGTCSCLF TASVAMVFSS LPIFLDPPSW GQMQVQQQQQ  360
QPLHCLLGGG SDHQHLMPPP SGLAPAXXXX XXXXXXXRVP LPEPGTLRCP RCDSTNTKFC  420
YFNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRNT KRSSKKSSRQ GGVAAAGGAA  480
AASSSSSTTS TSTTPTTTTT SSAAAAEVLA SMQAQLPQFG LPPAAAAAAL EASLEGYQYH  540
HYLPLQMQQQ FLQQGLQGYH FADGDSGGVF ADGFPRGVAS GLLAQLAAVK MEEHNNGGAV  600
AAHEQSYWPS SGGGGNGWPT EFLPGFSSSS SGNVV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00022.1.g00320.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	4e-32	OBF-binding protein 3